Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33840 695 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33860 693 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33830 669 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33810 435 / 3e-147 Glycosyl hydrolase superfamily protein (.1) AT4G33820 427 / 1e-143 Glycosyl hydrolase superfamily protein (.1) AT4G38650 411 / 1e-137 Glycosyl hydrolase family 10 protein (.1) AT2G14690 398 / 2e-132 Glycosyl hydrolase superfamily protein (.1) AT4G38300 247 / 9e-78 glycosyl hydrolase family 10 protein (.1) AT1G10050 209 / 9e-58 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G58370 202 / 8e-56 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087800 [exp] 539 / 0 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 513 / 2e-177 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 504 / 4e-174 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.004G173300 [exp] 409 / 9e-137 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.002G113066 [exp] 215 / 5e-61 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113132 [exp] 210 / 2e-58 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020985 [exp] 700 / 0 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 682 / 0 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 677 / 0 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 459 / 2e-152 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10025054 [exp] 407 / 7e-136 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014646 [exp] 334 / 8e-109 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10034490 [exp] 331 / 8e-107 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033787 [exp] 275 / 2e-89 AT4G33860 266 / 2e-86 Glycosyl hydrolase family 10 protein (.1) Lus10037528 [exp] 208 / 3e-57 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 202 / 2e-55 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00331 [poplar] [flax] Glyco_hydro_10 Glycosyl hydrolase family 10 CL0202 [poplar] [flax] GBD PF02018 [poplar] [flax] CBM_4_9 Carbohydrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G087900.2 pacid=42771753 polypeptide=Potri.009G087950.1.p locus=Potri.009G087900 ID=Potri.009G087900.2.v4.1 annot-version=v4.1 ATGAAGGCAGGAGATGAAAATGGTGGTCAACTTCTTCTGTCACTTTTCAGTATTATCCTATTTGCAGGTCTTCTAACCAATGCCTTGCCCTATGATTACT CGATCAGCCTTGAGTGCTTGGAAAATCCTCTCAGACCTCAGTATAATGGAGGAATCATTGTTAACCCAGAACTAAATGATGGACTAAGAGCATGGTCCAC ATTCGGAGATGCGAAGACAGAACATAGAGAATCCAATGGCAACAAATACGTTGTGGCTCATTCCAGGAATAATCCATATGGGAGCATGTCACAGAAGCTT TACTTGAAAAAGAACCACCTCTATACTTTCTCTGCCTGGGTACAAGTTAGCGAGGGAAATGTTCAGGTAACAGCCATTTTCAAGACAGACTCCGGCTTCA AAAAAGCTGGTTCCGTTTTTGCTGAGCCAAAGTGCTGGTCCATGCTTAAAGGTGGCCTTACAGTGGATGCATCCGGCCCTGCTGAGCTATATTTTGAGAG CAACAACACCTCGGTCGAAATATGGGTCGATAGCATCTCATTGCAACCGTTCACCGAGAAAGAATGGAGGTCTCATCAAGATCAAAGTATTGAAAGGACT CGAAAGGAAAAGGTTAGAATCCAAGCCATAGACGAACAAGGCAATCCCCTCTCAAATGCAACGATCTCCATTAAACAAAACAAACTGCGCTTCCCATTTG GTTGTGCTATAAACAAGAACATCCTCTCCAACACTGCCTACCAAGATTGGTTCACCTCAAGGTTTGGAGTGACAGCATTTGAAGATGAAATGAAGTGGTA CAGCACCGAAGCTACACGTGGCCAGGTTGACTATTCAGTTCCTGATGCCATGATGGCTTTTGCCAAGCAACACAATATAGCCGTACGTGGTCACAATGTG ATTTGGGACGATCCTAAGTACCAAAGTGGATGGGTAAATTCACTCTCACCGAATGATTTTCGAACGGCTGTACAAGCAAGGGTAGGGTCAGTTATGACAA GATACAGAGGCAGGCTTCTAGCATGGGACGTTGTTAACGAAAATATGCATTTTTCTTTCGTTGAAAGCAAATTAGGACAGAATGCTTCTTCAGTTATCTA CAACTCGGCTGGTAAGACTGATGGACTCACTACATTGTTTCTGAACGAGTATGATACCATTGAAAAGAGTGGTGAAGGTGCCGCTTCACCTGCTAAGTAC CTTCAAAAGCTCAAAGAAATCCAGAGTTTTCCTGGGAATGCCAATTTGCGCATGGGCATTGGACTAGAGTCTCACTTTACCATTCCAAACCTTCCTTATA TGAGAGCTTCCCTTGATACTCTTGCTTCTGCTAATGTTCCCATTTGGCTCACAGAAGTAGATGTTCAAGGCAACCCAGCTCAGCAGGCACAGTACTTGGA GCAGATTCTAAGGGAGGGATATTCTTACCCAAAAATTGCTGGAATAGTGATGTGGTCAGCATGGAAGCCACAGGGGTGTTACAGGATGTGTTTGACTGAT AACAATTTCAAAAACTTGGCTACCGGAGATGTTGTGGACAAGCTTTTGCATGAGTGGGGGGGTTCACTTATGGGCATGACAGATGCTAATGGCTTCTTCG AGGCTTCCCTTTCCCATGGAGACTACAATGTGAAGATTATTCACCATGGGGTGACAGATATATCTTCCTCGACTAGTAACCTTAAGGTGGATCCAACTGT TGCCGGCAGAACAACTTTGATCCACCAAGTTACTGCTTAA
AA sequence Show only first row Show all	>Potri.009G087900.2 pacid=42771753 polypeptide=Potri.009G087950.1.p locus=Potri.009G087900 ID=Potri.009G087900.2.v4.1 annot-version=v4.1 MKAGDENGGQLLLSLFSIILFAGLLTNALPYDYSISLECLENPLRPQYNGGIIVNPELNDGLRAWSTFGDAKTEHRESNGNKYVVAHSRNNPYGSMSQKL YLKKNHLYTFSAWVQVSEGNVQVTAIFKTDSGFKKAGSVFAEPKCWSMLKGGLTVDASGPAELYFESNNTSVEIWVDSISLQPFTEKEWRSHQDQSIERT RKEKVRIQAIDEQGNPLSNATISIKQNKLRFPFGCAINKNILSNTAYQDWFTSRFGVTAFEDEMKWYSTEATRGQVDYSVPDAMMAFAKQHNIAVRGHNV IWDDPKYQSGWVNSLSPNDFRTAVQARVGSVMTRYRGRLLAWDVVNENMHFSFVESKLGQNASSVIYNSAGKTDGLTTLFLNEYDTIEKSGEGAASPAKY LQKLKEIQSFPGNANLRMGIGLESHFTIPNLPYMRASLDTLASANVPIWLTEVDVQGNPAQQAQYLEQILREGYSYPKIAGIVMWSAWKPQGCYRMCLTD NNFKNLATGDVVDKLLHEWGGSLMGMTDANGFFEASLSHGDYNVKIIHHGVTDISSSTSNLKVDPTVAGRTTLIHQVTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33840			Glycosyl hydrolase family 10 p...		Potri.009G087900 [exp]	0	1
					Potri.001G433100 [exp]	21.33	0.6390
AT2G47480			Protein of unknown function (D...		Potri.010G140800 [exp]	88.62	0.5922
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.008G091300 [exp]	138.70	0.5780
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.013G109300 [exp]	224.57	0.5392

Compare expression of checked genes

Potri.009G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.