Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14750 367 / 8e-129 APK1, ATAKN1, APK ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) AT3G03900 320 / 2e-111 APK3 adenosine-5'-phosphosulfate (APS) kinase 3 (.1) AT4G39940 310 / 5e-106 APK2, AKN2 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 2, APS-kinase 2 (.1) AT5G67520 307 / 8e-105 APK4 adenosine-5'-phosphosulfate (APS) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293400 [exp] 516 / 0 AT2G14750 365 / 6e-128 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Potri.013G057900 [exp] 322 / 4e-112 AT3G03900 355 / 2e-126 adenosine-5'-phosphosulfate (APS) kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014641 [exp] 399 / 2e-141 AT2G14750 365 / 5e-128 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Lus10033788 [exp] 390 / 2e-137 AT2G14750 355 / 7e-124 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01583 [poplar] [flax] APS_kinase Adenylylsulphate kinase
Representative CDS sequence Show only first row Show all	>Potri.009G088100.1 pacid=42772746 polypeptide=Potri.009G088100.1.p locus=Potri.009G088100 ID=Potri.009G088100.1.v4.1 annot-version=v4.1 ATGAATGCTTCCGGGTTTAAGCCAGCACTGCCTGGAATTTCGAGCTCGAAAAGGCTCGGATTTTTTAGCTTCAGTGGCGGTAATCAACCCCTTGATTTGA AACCGAGAGGGGTTTGCCTGATCAAGGCTGCCATGGAAGAGACCCGGACGCTTAAACTGGATGTGAATGGCAAGGTGGAGGATAAGCTGCCAAATGGGCA CGCAGGCAAAAATCATAACCGATTGTCTACAATGGGAAACTCAACAAACATAAAGTGGCATGAATGCCCTGTTGAAAAAATTGACAGACAGAAGCTTCTC AAACAAAAGGGTTGTGTTGTATGGATCACCGGTCTCAGTGGTTCAGGGAAGAGCACTGTAGCATGTGCCTTGAGTCACATGTTGTACCAGAGAGGAAGCT TGTCTTACATTCTTGATGGCGACAACATCAGGCACGGTCTAAATCGTGACCTTAGTTTTAAAGCAGAAGACCGTGCCGAGAATATAAGGAGAGTTGGGGA GGTAGCAAAACTTTTTGCAGATGCTGGATTTATTTGCATCGCCTGCCTGATTTCTCCATACAGAAGGGACCGGGCTGAATGTCGTGCAATGTTACCAAGC GATGATTTTGTTGAGGTGTTTATGGATGTTCCCCTCCAAGTTTGTGAGAACAGAGACCCAAAAGGCTTGTATAAGCTTGCTCGTGCTGGAAAGATCAAAG GTTTTACTGGCGTTGATGATCCATATGAACCACCATTGGATGCTGAGATAGTATTGCAATGCAACACAGGAGACTGTTCTACCCCATGTGACATGGCTGA GAAGGTGATTTCTTACTTGGAGGTAAAAGGATATCTCCAAGCATAA
AA sequence Show only first row Show all	>Potri.009G088100.1 pacid=42772746 polypeptide=Potri.009G088100.1.p locus=Potri.009G088100 ID=Potri.009G088100.1.v4.1 annot-version=v4.1 MNASGFKPALPGISSSKRLGFFSFSGGNQPLDLKPRGVCLIKAAMEETRTLKLDVNGKVEDKLPNGHAGKNHNRLSTMGNSTNIKWHECPVEKIDRQKLL KQKGCVVWITGLSGSGKSTVACALSHMLYQRGSLSYILDGDNIRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGFICIACLISPYRRDRAECRAMLPS DDFVEVFMDVPLQVCENRDPKGLYKLARAGKIKGFTGVDDPYEPPLDAEIVLQCNTGDCSTPCDMAEKVISYLEVKGYLQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Potri.009G088100 [exp]	0	1
AT1G51440			alpha/beta-Hydrolases superfam...		Potri.009G051900 [exp]	13.30	0.8334
AT1G18390			Protein kinase superfamily pro...		Potri.015G044750 [exp]	15.09	0.8301
AT5G35690			unknown protein		Potri.014G160400 [exp]	18.76	0.8150
AT5G38260			Protein kinase superfamily pro...		Potri.015G045000 [exp]	23.36	0.8206
AT4G21870			HSP20-like chaperones superfam...		Potri.011G001600 [exp]	36.46	0.7758
					Potri.004G212550 [exp]	55.74	0.8074
AT1G70000	MYB		myb-like transcription factor ...		Potri.010G039233 [exp]	60.08	0.8051
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G064000 [exp]	60.17	0.7910	ATMEPCT.1
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Potri.012G043800 [exp]	62.84	0.7839	ATLCB1.3
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007400 [exp]	69.10	0.8005

Compare expression of checked genes

Potri.009G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.