Plant FIBer expression Database

Potri.009G088200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G293700
[exp]
399 / 8e-143 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020988
[exp]
0 / 1 ND /
PFAM info
Representative CDS sequence
>Potri.009G088200.3 pacid=42771537 polypeptide=Potri.009G088200.3.p locus=Potri.009G088200 ID=Potri.009G088200.3.v4.1 annot-version=v4.1
ATGGAATTGACACCCATTATTCCTACCTTCAAAATCTCTTTGCCAAATCCAGGAAGACAAGCAAGAACCCATATCTCTTGCTTAATTACTCCAGTTTCTT
ATTTATCACCACCAGACCAAATGACAACAACAAAAACCCACTTCAATTCCAGCAACATTCAATATGAGATTAACACTAACAATATAAAAAACGTAGCTGT
GCCAACCATGACTGAAGTATTGGCTGCATCAAAGGCCCAGAACCTGGACCTTCAGCTACAAACACTAGGACCCTTTTTCAGAATCACAGCTAAGAGTCTT
GAAACTCAAAATGAGCTTGGGAGAGCTGAAGGGCTGATAAGGGTCTGGTTAAAAGGCAAGATTCTCCATTTGGATTCAATAAGATTGAGAAGAGAAACAC
TTGGCATGGAAAAATCAATCTTTGGCATTGGTTTGTTCATTGGAGCTGTTGCTATTCGGTACGGGTATGACTCTGGTTGTAAGACTGCTGAGTTGCTTGC
TATTAATGACTCTGATCTTTACCATTCTAAGCTTGTTAGGTTCTACACTAGAATTGGGTTCAAGGCTGTGTACGAAGTGACGGGCTCGACTATTGGAGAC
CTTCCTCACATGTTGGTCTGGGGTGGCATTGGAACCCGAATGGATGCTGATGTCGAAGAGCTTCTAATAAAATGGTGTGCCAGGTTCAAAAGTCGAGAAT
GA
AA sequence
>Potri.009G088200.3 pacid=42771537 polypeptide=Potri.009G088200.3.p locus=Potri.009G088200 ID=Potri.009G088200.3.v4.1 annot-version=v4.1
MELTPIIPTFKISLPNPGRQARTHISCLITPVSYLSPPDQMTTTKTHFNSSNIQYEINTNNIKNVAVPTMTEVLAASKAQNLDLQLQTLGPFFRITAKSL
ETQNELGRAEGLIRVWLKGKILHLDSIRLRRETLGMEKSIFGIGLFIGAVAIRYGYDSGCKTAELLAINDSDLYHSKLVRFYTRIGFKAVYEVTGSTIGD
LPHMLVWGGIGTRMDADVEELLIKWCARFKSRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G088200
[exp]
0 1
AT3G48000 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, ald... Potri.015G074100
[exp]
8.00 0.9419 Pt-ALDH1.3
AT2G45770 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFEC... Potri.014G078800
[exp]
13.07 0.9430 CPFTSY.1
AT1G71720 PDE338 PIGMENT DEFECTIVE 338, Nucleic... Potri.005G197900
[exp]
14.73 0.9409
AT5G03940 SRP54CP, CPSRP5... SIGNAL RECOGNITION PARTICLE 54... Potri.016G078600
[exp]
14.83 0.9372
AT5G02830 Tetratricopeptide repeat (TPR)... Potri.006G132700
[exp]
14.83 0.9417
AT3G63190 HFP108, AtcpRRF... "ribosome recycling factor, ch... Potri.002G052400
[exp]
14.96 0.9393 Pt-RRF.1
AT2G23560 ATMES7 ARABIDOPSIS THALIANA METHYL ES... Potri.007G036800
[exp]
16.43 0.9446
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.006G160300
[exp]
18.97 0.9292
AT4G22720 Actin-like ATPase superfamily ... Potri.017G029200
[exp]
22.64 0.9273
AT5G19500 Tryptophan/tyrosine permease (... Potri.001G224950
[exp]
25.51 0.9311

Potri.009G088200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.