Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19650 124 / 3e-33 cyclin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295000 [exp] 174 / 2e-54 AT3G19650 65 / 4e-13 cyclin-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011420 [exp] 187 / 3e-57 AT3G19650 113 / 3e-29 cyclin-related (.1) Lus10002122 [exp] 166 / 4e-48 AT3G19650 94 / 2e-21 cyclin-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09405 [poplar] [flax] Btz CASC3/Barentsz eIF4AIII binding
Representative CDS sequence Show only first row Show all	>Potri.009G088600.1 pacid=42771722 polypeptide=Potri.009G088600.1.p locus=Potri.009G088600 ID=Potri.009G088600.1.v4.1 annot-version=v4.1 ATGTCTCGTCGAGAGCGCGGTTCTGACTCTAGGCGACACCGTTCTGGCTTCGACAGAGAACCCAGTCCTAAGAGGTCAAGGAGAGATGGAAAACCAGAGA CAGAGAGAGTAACAATTGACTCTAATTTAGATCAAAAGAACCGGCGCCGGTTGCAAGATGCATTGCCTCTTGAGACCCCGTCTGGTCCGGATTCTGCCAA GGTGGAGTCTGGTGGTGTGAGCAAAGAAACAGACAAGAAACCAAATGAACACGGTGAAGGAAGCAAGCATTCTTCTAAGCCAACTGAAGTGCCTTGGTCT CGGTCCTTTTTTCAGCATGATGAACGTGGTAATGCTGGGCAAGGTGGTCGAAGCTTGGGCCGGAGATCTGCTACTGAGCGCCGATTTAGGGATTCAAAGG ATGATCGGGGTGAAAGGACAGAAAACAAGGCAGCAACTTATGATTCGCGGCAAAGAGATGAGAAGCCACGAGGTAAGGGGGATGACAAAAGTGTATGGGG CCATGATGGTTTCTTGAAAATGGAGGCTGAGCCGCCACCACCTGTGCGGAAAAGACCTGCATTTCAGGAGAAGAAAATCCCAGCGGAGACTGACAATCCT GACAAAGCAACTGTGGAACCTGCAAGGTCAAACCATTCTCATCGTCCTTTGTCGATTAGTGAAAGGAGGGAGGAAAGAGACCGTAACCCTCGCTATGTAG ACAGACCCGAGAGGCCTGCTGCAGGAAATAGAGAAGTGAAGAAGAGTGACCTTGCATCAAGAGAAAGATTTGGTGGTGATGGTGGTGGAAATTACAGGGG AAGAGAGAGATTCAGCGACAGACAAAGTTATCGCCCAAGTGGTACGCGAGGAGAGAAATGGAAGCATGATTTGTTTGACGACGCTGATAGGAGTCCAACC AAGAAGAACGAAGAGGATCAAATTGCAAAGATTGAAGCACTCTTGGCATCATAG
AA sequence Show only first row Show all	>Potri.009G088600.1 pacid=42771722 polypeptide=Potri.009G088600.1.p locus=Potri.009G088600 ID=Potri.009G088600.1.v4.1 annot-version=v4.1 MSRRERGSDSRRHRSGFDREPSPKRSRRDGKPETERVTIDSNLDQKNRRRLQDALPLETPSGPDSAKVESGGVSKETDKKPNEHGEGSKHSSKPTEVPWS RSFFQHDERGNAGQGGRSLGRRSATERRFRDSKDDRGERTENKAATYDSRQRDEKPRGKGDDKSVWGHDGFLKMEAEPPPPVRKRPAFQEKKIPAETDNP DKATVEPARSNHSHRPLSISERREERDRNPRYVDRPERPAAGNREVKKSDLASRERFGGDGGGNYRGRERFSDRQSYRPSGTRGEKWKHDLFDDADRSPT KKNEEDQIAKIEALLAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19650			cyclin-related (.1)		Potri.009G088600 [exp]	0	1
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Potri.008G213900 [exp]	1.00	0.7671
AT2G19490			recA DNA recombination family ...		Potri.018G067900 [exp]	9.21	0.6758
AT5G61170			Ribosomal protein S19e family ...		Potri.015G056100 [exp]	35.21	0.7081
AT3G26750			unknown protein		Potri.007G019733 [exp]	37.74	0.6802
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.018G137400 [exp]	37.94	0.6304
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	53.24	0.6640
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Potri.002G095800 [exp]	64.14	0.6213
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	78.70	0.6258
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G005500 [exp]	81.63	0.6052
AT3G06340			DNAJ heat shock N-terminal dom...		Potri.008G196201 [exp]	87.74	0.6007

Compare expression of checked genes

Potri.009G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.