Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	VSR.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14740 1090 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 1078 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT3G52850 909 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 900 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT1G30900 791 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 787 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 725 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT1G63690 47 / 3e-05 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 44 / 0.0002 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G22670 43 / 0.0005 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294400 [exp] 1176 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.006G108800 [exp] 942 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.016G137300 [exp] 937 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155200 [exp] 805 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 788 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 212 / 1e-65 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 63 / 5e-12 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.019G082500 [exp] 54 / 2e-07 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.009G154100 [exp] 45 / 0.0002 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020967 [exp] 1103 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10012366 [exp] 1077 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10002130 [exp] 1045 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10022737 [exp] 920 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 916 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025136 [exp] 898 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10006944 [exp] 777 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10025220 [exp] 706 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025361 [exp] 465 / 3e-159 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10019557 [exp] 51 / 1e-06 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0001 [poplar] [flax] EGF PF12662 [poplar] [flax] cEGF Complement Clr-like EGF-like
Representative CDS sequence Show only first row Show all	>Potri.009G088900.3 pacid=42772246 polypeptide=Potri.009G088900.3.p locus=Potri.009G088900 ID=Potri.009G088900.3.v4.1 annot-version=v4.1 ATGGTGCTAAAGAGACTATCTTTGAGTCTCTTTTTAGGGTTTTTGTTTACTTCTTTGATAGTACCAAGCTCTATAGCTAGATTTGTTGTTGAAAAAAACA GCTTGAGGGTTACATCACCAGATAAAATAAAGGGTACTTATGATAGTGCAATTGGGAATTTCGGGATACCACAATATGGAGGTAGTATGGCAGGTGCTGT TGTGTATCCAAAAGATAATAAGAAGGGTTGTAAAGAGTTTGAAGAGTTTAGGATTTCGTTTCAGTCGAAGCCTGGTGCTTTACCCACTTTTGTTTTGGTG GATCGTGGAGATTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGGGCTTCTGCAGTGCTTGTTGCGGATGACATGGAGGAAGCATTAATAA CCATGGACACACCTGAAGAGGATGTTTCATCTGCAAAATACATTGAGAACATAACAATACCGTCTGCTCTTATTGAGAAAAGTTTTGGTGAAACATTAAA GAAAGCACTTAGCAACGGGGATATGGTCAACGTGAATCTTGATTGGAGAGAAGCTGTTCCACACCCGGATGATCGTGTGGAGTATGAGCTTTGGACCAAC AGCAATGATGAATGTGGGGTTAAGTGTGATATGTTGATGGAATTTGTGAAGGATTTTAGGGGCGCAGCACAGATACTTGAGAAAGGTGGTTACACTCAGT TTACACCCCACTACATTACCTGGTACTGTCCTCAAGCATTCACCTTGAGCAGGCAGTGCAAGTCACAGTGCATAAATCATGGAAGATATTGTGCTCCTGA TCCTGAACAAGACTTCAGCTCAGGTTATGATGGGAAAGATGTTGTTCTTGAAAATTTGAGACAACTATGTGTTTTTAAAGTTGCAAATGAGACCAAAAAA CCTTGGGTGTGGTGGAATTATGTAACTGATTTTCAAATCAGATGTCCCATGAAAGAGAAAAGGTACAACAAAGAATGTGCTGATGCTGTCATCAAATCTC TTGGGCTCGATGCTAAGAAGATTGATAAGTGTATGGGAGACCGAAATGCTGACTCTGACAATCCTGTTCTGAAAGAAGAGCAAAATGCCCAGGTTGGAAA AGGATCGAGGGGTGATGTAACCATATTGCCCACCCTTGTTGTCAACAATCGTCAGTATCGAGGAAAGTTGGAGAAAGGTGCTGTTCTAAAGGCCATATGC TCTGGTTTTGAGGAAACAACAGAGCCAGCGGTTTGTTTGAGTGGTGATGTGGAGACCAATGAGTGCTTGGACAATAATGGGGGTTGCTGGCAAGATAAAA CAGCCAACATCACAGCCTGCAGGGACACATTTCGTGGGAGAGTATGTGAGTGCCCTCTTGTCGATGGTGTGCAGTTCAAAGGAGATGGTTACAGCCACTG TGAAGTGAGTGGATCTGGGAGGTGCAAGATAAACAATGGAGGCTGTTGGCACAAATCTCGGGATGGACACACCTTCTCTGCTTGTCTGGATGTTGATGGT GGTAAATGCCAGTGTCCTCCAGGATTTAAAGGTGATGGTGTGAAAAGTTGTGTAGATGTTGATGAGTGCAAAGAGAGAAAAGCCTGTCAGTGCTCTGCAT GTAGTTGCAAAAATACTTGGGGAAGCTATGAATGCTCTTGTAGTGGGGATCTTCTGTATATCAGAGACCATGATACCTGCATAAGTAAGAGCGGCACTGA AGTGAGATCAGCATGGGCTGCAGTTTGGGTCATTTTGTTAGGCCTGGCGATGGCTGGTGGTGGAGGATATCTTATCTACAAATATAGATTAAGGTCATAC ATGGATTCAGAGATAAGAGCTATCATGGCACAGTACATGCCTCTGGACAGTCAAGCAGAAGTTCCAAATCATGTCCATGACGAGCGGACTTGA
AA sequence Show only first row Show all	>Potri.009G088900.3 pacid=42772246 polypeptide=Potri.009G088900.3.p locus=Potri.009G088900 ID=Potri.009G088900.3.v4.1 annot-version=v4.1 MVLKRLSLSLFLGFLFTSLIVPSSIARFVVEKNSLRVTSPDKIKGTYDSAIGNFGIPQYGGSMAGAVVYPKDNKKGCKEFEEFRISFQSKPGALPTFVLV DRGDCFFALKVWNAQKAGASAVLVADDMEEALITMDTPEEDVSSAKYIENITIPSALIEKSFGETLKKALSNGDMVNVNLDWREAVPHPDDRVEYELWTN SNDECGVKCDMLMEFVKDFRGAAQILEKGGYTQFTPHYITWYCPQAFTLSRQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVLENLRQLCVFKVANETKK PWVWWNYVTDFQIRCPMKEKRYNKECADAVIKSLGLDAKKIDKCMGDRNADSDNPVLKEEQNAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAIC SGFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANITACRDTFRGRVCECPLVDGVQFKGDGYSHCEVSGSGRCKINNGGCWHKSRDGHTFSACLDVDG GKCQCPPGFKGDGVKSCVDVDECKERKACQCSACSCKNTWGSYECSCSGDLLYIRDHDTCISKSGTEVRSAWAAVWVILLGLAMAGGGGYLIYKYRLRSY MDSEIRAIMAQYMPLDSQAEVPNHVHDERT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.009G088900 [exp]	0	1	VSR.1
AT4G13270			Late embryogenesis abundant (L...		Potri.006G159400 [exp]	6.00	0.8047
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.006G213600 [exp]	11.09	0.8555
AT1G79090			unknown protein		Potri.011G143900 [exp]	28.56	0.8215
AT5G23230		NIC2	nicotinamidase 2 (.1)		Potri.003G003300 [exp]	31.68	0.8264
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.005G074900 [exp]	32.49	0.7445	Pt-UBP3.2
AT2G13690			PRLI-interacting factor, putat...		Potri.005G058700 [exp]	32.77	0.8242
AT1G04000			unknown protein		Potri.002G259400 [exp]	46.00	0.7814
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	49.31	0.7842
AT5G03080			Phosphatidic acid phosphatase ...		Potri.016G086700 [exp]	57.80	0.7295
AT5G51280			DEAD-box protein abstrakt, put...		Potri.004G224000 [exp]	68.74	0.8055

Compare expression of checked genes

Potri.009G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.