Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19590 603 / 0 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 600 / 0 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 218 / 7e-69 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G80670 197 / 1e-60 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 55 / 3e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 53 / 9e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 49 / 2e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 47 / 9e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 47 / 1e-05 MAC3B MOS4-associated complex 3B (.1.2.3) AT4G15900 45 / 5e-05 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295100 [exp] 653 / 0 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 220 / 3e-69 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 207 / 2e-64 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G180000 [exp] 183 / 7e-55 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G048100 [exp] 177 / 8e-53 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 54 / 6e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 50 / 8e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 50 / 9e-07 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 44 / 0.0001 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003954 [exp] 625 / 0 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 620 / 0 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014343 [exp] 211 / 1e-65 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026051 [exp] 209 / 1e-65 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026095 [exp] 206 / 1e-63 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 202 / 5e-62 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 54 / 9e-08 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10033710 [exp] 48 / 9e-06 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10003855 [exp] 46 / 2e-05 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 46 / 3e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.009G089200.1 pacid=42772142 polypeptide=Potri.009G089200.1.p locus=Potri.009G089200 ID=Potri.009G089200.1.v4.1 annot-version=v4.1 ATGACAGCTGTCATCCCGCCACAATTCTCCGGCCGCGAACTCTCGAATCCCCCAACCGACGGGATCTCGAACCTCCGATTCTCCAATCACAGCGACCACC TGCTCGTCTCCTCATGGGACAAGACTGTGAGATTATACGACGCGGGTACTAATGTTTTGCGAGGAGAGTTTATGCACGGTGGTGCCGTGCTTGATTGCTG CTTCCACGACGATTCTTCCGGTTTCAGTGCCAGCGCCGACAACACCGTGCGACGGTTGGTTTTTAACTACGAAAAGGAGGACATTTTGGGAAGGCATGAT GCGCATGTTCGTTGTGTCGAGTACTCTTATGCTGCAGGGCAAGTAATCACTGGTAGCTGGGACAAAACACTTAAGTGTTGGGATCCTAGAGGAGCTAGTG GGCAAGAGCGCACCCTCATCGGCACATATCTGCAACCTGAGCGTGTTTACTCTCTATCTCTTGTTGGAAATCGTTTAGTAGTAGCTACTGCAGGAAGACA CGTCAATGTCTATGATCTACGAAATATGTCTCAACCTGAGCAAAGGAGAGAATCATCTTTGAAATATCAAACTCGATGTGTGCGTTGCTACCCCAATGGC ACAGGATATGCACTCAGTTCTGTTGAAGGGCGAGTAGCAATGGAGTTTTTTGATTCTTCAGAGGCCAGTCAGGCAAAAAAATATGCATTCAAGTGTCATC GAAAGTCAGAGGCTGGAAGAGACATTGTCTATCCCGTAAATGCTATTGCTTTCCATCCTGTCTATGGTACATTTGCAACTGGAGGTTGTGATGGTTTCAT CAACATATGGGATGGGAACAACAAAAAGAGACTGTATCAGTACTCAAAGTATCCATCAAGTATTGCAGCACTTTCATTTAGCAGAGATGGCAGTCTATTG GCTGTGGCATCAAGTTACACATATGAAGAGGGAGATAAACCGCATGAGCCAGATGCTATCTTTGTACGAAGTGTGAATGAAATAGAAGTCAAGCCAAAAC CAAAACCATACCCCAACCCCCCAGCATAA
AA sequence Show only first row Show all	>Potri.009G089200.1 pacid=42772142 polypeptide=Potri.009G089200.1.p locus=Potri.009G089200 ID=Potri.009G089200.1.v4.1 annot-version=v4.1 MTAVIPPQFSGRELSNPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDAGTNVLRGEFMHGGAVLDCCFHDDSSGFSASADNTVRRLVFNYEKEDILGRHD AHVRCVEYSYAAGQVITGSWDKTLKCWDPRGASGQERTLIGTYLQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG TGYALSSVEGRVAMEFFDSSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPVYGTFATGGCDGFINIWDGNNKKRLYQYSKYPSSIAALSFSRDGSLL AVASSYTYEEGDKPHEPDAIFVRSVNEIEVKPKPKPYPNPPA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.009G089200 [exp]	0	1
AT3G27350			unknown protein		Potri.001G336300 [exp]	2.00	0.9645
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Potri.001G041400 [exp]	4.24	0.9511
AT3G42725			Putative membrane lipoprotein ...		Potri.018G065700 [exp]	8.00	0.9539
AT4G17240			unknown protein		Potri.006G017200 [exp]	8.48	0.9434
AT4G35930			F-box family protein (.1)		Potri.005G110200 [exp]	9.32	0.9291
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Potri.014G121000 [exp]	9.59	0.9309	PRL.2
AT5G65120			unknown protein		Potri.007G090500 [exp]	9.94	0.9416
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	12.00	0.9486
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	12.44	0.9486
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.009G165800 [exp]	13.41	0.9459

Compare expression of checked genes

Potri.009G089200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.