Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CLPR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49970 460 / 5e-162 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) AT4G17040 161 / 2e-46 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 160 / 7e-46 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT5G45390 105 / 1e-25 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G12410 104 / 2e-25 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT5G23140 102 / 5e-25 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G66670 100 / 9e-24 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G02560 92 / 6e-21 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G11750 84 / 2e-18 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) ATCG00670 70 / 1e-13 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295266 [exp] 374 / 3e-131 AT1G49970 306 / 5e-105 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.003G083300 [exp] 164 / 2e-47 AT4G17040 441 / 2e-157 happy on norflurazon 5, CLP protease R subunit 4 (.1) Potri.013G017166 [exp] 157 / 9e-45 AT1G09130 451 / 2e-159 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.004G092100 [exp] 108 / 1e-26 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.005G092600 [exp] 101 / 9e-25 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.007G071700 [exp] 102 / 1e-24 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.003G103300 [exp] 101 / 4e-24 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.001G115900 [exp] 96 / 2e-22 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) Potri.002G195200 [exp] 94 / 2e-21 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003953 [exp] 292 / 1e-96 AT1G49970 318 / 8e-107 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10020990 [exp] 282 / 3e-92 AT1G49970 308 / 1e-102 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10029891 [exp] 120 / 2e-29 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10017397 [exp] 102 / 5e-25 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10020649 [exp] 101 / 1e-24 AT1G09130 151 / 4e-44 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10010196 [exp] 101 / 1e-24 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10040981 [exp] 100 / 7e-24 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 99 / 3e-23 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1) Lus10007589 [exp] 99 / 3e-23 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10012156 [exp] 97 / 1e-22 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00574 [poplar] [flax] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Potri.009G089300.1 pacid=42771006 polypeptide=Potri.009G089300.1.p locus=Potri.009G089300 ID=Potri.009G089300.1.v4.1 annot-version=v4.1 ATGACTATGGCAACTTCTCTGCTATCTCCACTCGCAGCTCCAAACCCAGAACTGGTATATCCAGCTACCGGGTTGCAACAGAAGTCTTCCTTTCTCCCAA GCGCCAGCCTCTTTTTATTAAGCAATCCGAGAAATCAAAGGGTGCTTCAACAGCAAAGATGCTGCTATTACAAGTCCCCTTCTGCATCTGGGAACCCACT GAATCATATTCCCACTCAGTTTAGAGAAGAAAATCTCAAAGATGGATTGATGGAAAATTATAAAAATGTACCTCAATCTCTTTATGGTCTTACTCCTTCA CAAATGGACATGTTCATGACTGAAGATAATCCCATTCGTCGTCAGTCAGGGAGTGTCACAGAGCAAAGCATCTCATCTAGAAAGAACTATCTGGATCACG GAGGGATGTATAGTGTATCAGGCATGATGGATCAAGGTCCTTCAAAATATAGTATGAGCGTAAGCATGTACCGTGGAGGGGGCAGAGGATATGGAAGACC TGAATCTGCTCCTCCGGATTTGCCTTCTTTGCTCTTAGATGCTCGGATATGCTACCTTGGAATGCCAATTGTACCAGCTGTCACAGAGCTTCTTGTTGCT CAATTCATGTATTTGGATTATGAAGACCCTTCAAAGCCTATATATCTATATATAAACTCATCTGGGACACAGAATGAGAAGATGGAGACTGTTGGATCTG AAACTGAAGCATATGCCATTGCAGACATCATGTCTTACTGCAAATCAACTATCTATACCGTGAATTGTGGCATGGCATATGGTCAAGCAGCAATGCTTCT ATCTCTTGGAGCCAAGGGTTATCGCGCTTTACAGCCAAACTCGTCCACAAAATTATACTTGCCTAAAGTCAACCGATCAAGTGGAGCTGCAGTAGATATG TGGATCAAGGCCAAGGAATTGGATGCGAATACTGAGTATTATATCGAGCTTTTAGCAAAAGGAACTGGGAAACCGAAGGAAGAACTTGTTAAAGACATCC AGCGACCAAAATATCTCAAAGCTCAAGAAGCCATAGATTATGGGATTGCAGACAAGTTACTTAGCTCAAATGATGATGCATTTGAGAAACGGGATTATGA TGCGTTGCTTGCTCAAACAAAAGCCATGAAGGCACAAGCTGCTGGTCCAAGAGCAGCTCCATCAGGATCTAGGTGA
AA sequence Show only first row Show all	>Potri.009G089300.1 pacid=42771006 polypeptide=Potri.009G089300.1.p locus=Potri.009G089300 ID=Potri.009G089300.1.v4.1 annot-version=v4.1 MTMATSLLSPLAAPNPELVYPATGLQQKSSFLPSASLFLLSNPRNQRVLQQQRCCYYKSPSASGNPLNHIPTQFREENLKDGLMENYKNVPQSLYGLTPS QMDMFMTEDNPIRRQSGSVTEQSISSRKNYLDHGGMYSVSGMMDQGPSKYSMSVSMYRGGGRGYGRPESAPPDLPSLLLDARICYLGMPIVPAVTELLVA QFMYLDYEDPSKPIYLYINSSGTQNEKMETVGSETEAYAIADIMSYCKSTIYTVNCGMAYGQAAMLLSLGAKGYRALQPNSSTKLYLPKVNRSSGAAVDM WIKAKELDANTEYYIELLAKGTGKPKEELVKDIQRPKYLKAQEAIDYGIADKLLSSNDDAFEKRDYDALLAQTKAMKAQAAGPRAAPSGSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	0	1	Pt-CLPR1.1
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	1.41	0.9849
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	1.41	0.9876
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	2.44	0.9802
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	2.44	0.9797
AT3G46610			Pentatricopeptide repeat (PPR-...		Potri.017G070800 [exp]	3.16	0.9797
AT5G46420			16S rRNA processing protein Ri...		Potri.001G353800 [exp]	4.00	0.9800
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	4.58	0.9687
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	4.89	0.9779
AT2G44870			unknown protein		Potri.004G030100 [exp]	7.00	0.9780
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	8.94	0.9697

Compare expression of checked genes

Potri.009G089300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.