Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19580 121 / 4e-33 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT1G27730 115 / 4e-31 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G04340 103 / 1e-26 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT3G49930 99 / 3e-25 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G67450 89 / 5e-21 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT5G43170 87 / 7e-21 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT1G49900 82 / 2e-17 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT3G60580 73 / 4e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G56200 73 / 9e-15 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT2G45120 72 / 2e-14 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295500 [exp] 217 / 8e-71 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.002G119300 [exp] 140 / 7e-41 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.014G017300 [exp] 138 / 5e-40 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G143800 [exp] 71 / 5e-14 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.001G235800 [exp] 68 / 8e-14 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G209400 [exp] 65 / 1e-12 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 65 / 1e-12 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.014G066100 [exp] 66 / 2e-12 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.016G098100 [exp] 64 / 6e-12 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033798 [exp] 136 / 4e-39 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10014631 [exp] 134 / 7e-38 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10032848 [exp] 121 / 3e-33 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10004316 [exp] 110 / 8e-29 AT5G04340 134 / 3e-38 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) Lus10018696 [exp] 81 / 2e-18 AT3G49930 130 / 6e-38 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10028173 [exp] 71 / 5e-14 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 70 / 2e-13 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10030330 [exp] 67 / 4e-13 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10009278 [exp] 67 / 7e-13 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10038929 [exp] 61 / 7e-11 AT1G02030 101 / 2e-25 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.009G089400.1 pacid=42772255 polypeptide=Potri.009G089400.1.p locus=Potri.009G089400 ID=Potri.009G089400.1.v4.1 annot-version=v4.1 ATGGCTCTTGAAGCTCTGAACTCTCCTACAACAGCCACTCCTTTCAATTATGAAGACACATGTGTTAAAAGGAAACGCTCCAAGAGATCTCGTAGTGAGT CCCCTTCAACGGAGGAAGAATACCTTGCTCTTTGCCTTATCATGCTCGCTCGTGGCGGCTCCACCACCTCCACTACCACAGCCAACAAAGAAACCGCCCC CCCAGCACCCCCCCAGCCGCCGACCTTGAATCTTTCATACAAGTGTACGGTTTGCAACAAGGCTTTCCCTTCTTACCAGGCTCTTGGTGGGCACAAAGCC AGTCATAGGAAATCCTCCTCTGAGTCCACCACAGCCGCCGAGAACCCCTCAACCTCCACCACACCTGCAACTACCACCAACACCAGTGGCAGGACCCATG AGTGCTCTATCTGCCACAAAACTTTCCCTACCGGCCAGGCCTTAGGTGGGCACAAACGTTGTCATTATGAAGGTACTATTGGAGGCAACAACAACAGCAG TACTAGTGCTGCAATCACCACCTCAGACAGTGGTGCTGTCGGAGGCGGCGGCGTAAGCCAGAGTCAAAGTCAAAGAAGCGGTGGTGGATTTGACTTTGAC CTGAACTTGCCCGCTTTGCCTGAATTTGAAGGTCCAAGAATCGGTCACCAAGCACTATTAAGAGATCAAGAAGTGGAGAGTCCTTTGTCAGGGAAAAAGC CAAGATTAACGCTATCGCTTCAGAAAGAAAAGACCGGCGTGGTTTCTTTGTAA
AA sequence Show only first row Show all	>Potri.009G089400.1 pacid=42772255 polypeptide=Potri.009G089400.1.p locus=Potri.009G089400 ID=Potri.009G089400.1.v4.1 annot-version=v4.1 MALEALNSPTTATPFNYEDTCVKRKRSKRSRSESPSTEEEYLALCLIMLARGGSTTSTTTANKETAPPAPPQPPTLNLSYKCTVCNKAFPSYQALGGHKA SHRKSSSESTTAAENPSTSTTPATTTNTSGRTHECSICHKTFPTGQALGGHKRCHYEGTIGGNNNSSTSAAITTSDSGAVGGGGVSQSQSQRSGGGFDFD LNLPALPEFEGPRIGHQALLRDQEVESPLSGKKPRLTLSLQKEKTGVVSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19580	C2H2ZnF	AZF2	zinc-finger protein 2 (.1.2)		Potri.009G089400 [exp]	0	1
AT5G12340			unknown protein		Potri.001G276400 [exp]	3.74	0.9455
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.019G031400 [exp]	4.00	0.9100
AT1G32690			unknown protein		Potri.003G092700 [exp]	4.69	0.9446
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.001G315000 [exp]	6.48	0.9139
AT5G46080			Protein kinase superfamily pro...		Potri.011G058300 [exp]	6.63	0.9407
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133901 [exp]	8.12	0.9409
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200500 [exp]	11.00	0.9250
AT1G30755			Protein of unknown function (D...		Potri.005G240300 [exp]	11.83	0.9077
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133850 [exp]	12.04	0.9355
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134101 [exp]	12.96	0.9327

Compare expression of checked genes

Potri.009G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.