Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49890 516 / 4e-176 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT3G19570 458 / 7e-154 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 197 / 1e-54 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT5G43160 169 / 4e-48 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT2G24070 178 / 5e-48 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 115 / 3e-27 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT3G60000 108 / 7e-25 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 105 / 3e-24 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 83 / 2e-16 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295800 [exp] 842 / 0 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 381 / 1e-123 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 372 / 4e-120 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G181700 [exp] 202 / 9e-57 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 197 / 7e-55 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G000400 [exp] 135 / 4e-34 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 125 / 1e-30 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 99 / 3e-22 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 86 / 4e-17 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033792 [exp] 613 / 0 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10014636 [exp] 565 / 0 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 305 / 2e-94 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10022176 [exp] 192 / 7e-53 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010780 [exp] 184 / 1e-50 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 183 / 9e-50 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10007759 [exp] 143 / 2e-39 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 147 / 9e-38 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10038729 [exp] 145 / 4e-37 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10007760 [exp] 112 / 2e-26 AT1G49890 127 / 1e-31 QWRF domain containing 2, Family of unknown function (DUF566) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [poplar] [flax] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Potri.009G089800.1 pacid=42772244 polypeptide=Potri.009G089800.1.p locus=Potri.009G089800 ID=Potri.009G089800.1.v4.1 annot-version=v4.1 ATGGTGGCTGCCATTCCTCAAGCAGCAGCAGCAGCTAGTTCAACTGACAAAACCCCTAATCTAACAAGACCCCCACTTTTACCTTCAGAGAAAGACCACC AACAAAACAATGGTAGTGCCCACATTGCAACAAGAAAACCCAGGGGCAAACAAGTACCTTCTAGGTACCTCTCTCCCTCTCCTTCCACTTCCACTTCTAC AACCACCACCACCACCACCACCACTTCAAGTTCTTCATCTTCCAGTTCTTCTTTTCCAAGGAGATTTGCTTCACCATTACTTTCAAGGTCTACAAATTCT GGACCTTTACACACACCATTAACGACAACTACATGTTCTCTTCCTTCCGGGTCTAAAAGATCCCAATCTGTTGATAGAAGGAGGCCTGTTACTTCTTCAA GGCCAACAACACCAAACCCACAGCGCACTGCAACTGAAATATCAGCTGCTACAAAGATGTTGATTACTTCAACAAGGAGCTTATCAGTTTCTTTTCAAGG CGAGGCCTTTTCGCTTCCAATTAGTAAAGCTAAGTCTGTGACACCACCACAAAACAATGTGGTTAGAAAAGCCACTCCTGAGAGGAGGAGAGCTACTCCA GTGAGAGATCAGGGTGAGAATTCAAGGCCTATGGATCAGCATAGGTGGCCAGGGAGAAGTAGAGAAGGGAATTTGAAAGAGCGGAATCCACTGTTGTCCA GGAGTTTGGATTGTAGTGTTGTTGTTGGTGGCGGCGGAGATAGGAGGGTTATTGGATCTGGGTTTTTTGGGGTCAAGTCATTGCAGCAGTCTATTGTTGA CGAGGGCAGGAGGTTGAGCTTGGATTTAGGCAATGCTAGGCAAAACACAGATACTATTTCTGTAAATGAGTCATCTTTTACTGGTGATCTTACTGCTTCT GATAGTGATAGTGTTTCCTCTGGTAGCACTTCAGGAGTGCCAGAAATTGGTAAACGAAAAACTGCTCCCCGTGGCATTACTGTTTCGGCAAGGTTTTGGC AGGAAACCAATAGCAGGTTGAGGAGGTTGCAGGATCCAGGTTCACCCTTATCTACTAGTCCTGGTTCTAGAATGGGTGTTTCACCAAAGGCTATTCAATC AAAAAGATTTAGTAGTGATGGTCCTTTGTCATCTCCAAGAATGCTGGCGGCTTCACCTATTAGGGGAGCTACACGGCCTGCATCTCCTAGTAAACTTTGG ACAACTTCAGCTTCATCTCCATCTAGAGGGATGTCTAGTCCTTCAAGGGTGAGATCAATGAGTAGCAGTTCACCCTCAATTCTTAGTTTCTCTGTTGATT TAAGGAGAGGGAAGATGGGGGAGGATAGAATTGTTGATGCACACGTGTTGAGGCTTTTGTATAACCGTTATTTGCAATGGCGGTTTGTAAATGCAAGGGA AGATGCTACCTTCATGGTGCAAAGACTGAATGCAGAGAAAAATTTGTGGAATGCATGGGTAACAATCTCAGAACTGCGGCATTCTGTCACTCTCAGAAGA GTCAAGTTACTATTGCTGAGGCAAAAGCTGAAGCTGACTTCTATCCTCAAGGGACAAATTGCCCATTTAGAAGAATGGTCACATCTTGATAGAGGTCACT CGAGTTCTCTGGAAGGAGCAACCGAAGCTCTGAAGGCCAGTACTCTTCGCCTTCCTGTTGTTGGAAAAACAGTGGCCGATGTACAAAATCTGAAGGATGC TGTTGGTTCAGCAGTTGATGTAATGCAAGCAATGGCATCCTCTATATGCTCGCTATCATCAAAGGTGGAAGACATGAATTCATTGGTGGCTGAGCTTGTT AATGTGACTGCTAAGGAAAGACACATGCTTCAACAATGTAAAGATTTCTTGTCCACCTTAGCAACCGTGCAGGTTAAGGATTGTAGCGTGAGAACACATA TATTACAACTTAATCGTTTACCAACTACCACCAGCCTGACAACACGTGTGTAG
AA sequence Show only first row Show all	>Potri.009G089800.1 pacid=42772244 polypeptide=Potri.009G089800.1.p locus=Potri.009G089800 ID=Potri.009G089800.1.v4.1 annot-version=v4.1 MVAAIPQAAAAASSTDKTPNLTRPPLLPSEKDHQQNNGSAHIATRKPRGKQVPSRYLSPSPSTSTSTTTTTTTTTSSSSSSSSSFPRRFASPLLSRSTNS GPLHTPLTTTTCSLPSGSKRSQSVDRRRPVTSSRPTTPNPQRTATEISAATKMLITSTRSLSVSFQGEAFSLPISKAKSVTPPQNNVVRKATPERRRATP VRDQGENSRPMDQHRWPGRSREGNLKERNPLLSRSLDCSVVVGGGGDRRVIGSGFFGVKSLQQSIVDEGRRLSLDLGNARQNTDTISVNESSFTGDLTAS DSDSVSSGSTSGVPEIGKRKTAPRGITVSARFWQETNSRLRRLQDPGSPLSTSPGSRMGVSPKAIQSKRFSSDGPLSSPRMLAASPIRGATRPASPSKLW TTSASSPSRGMSSPSRVRSMSSSSPSILSFSVDLRRGKMGEDRIVDAHVLRLLYNRYLQWRFVNAREDATFMVQRLNAEKNLWNAWVTISELRHSVTLRR VKLLLLRQKLKLTSILKGQIAHLEEWSHLDRGHSSSLEGATEALKASTLRLPVVGKTVADVQNLKDAVGSAVDVMQAMASSICSLSSKVEDMNSLVAELV NVTAKERHMLQQCKDFLSTLATVQVKDCSVRTHILQLNRLPTTTSLTTRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	0	1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	1.00	0.9144
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	6.70	0.8914
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	6.92	0.8868
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	7.21	0.8944
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	8.06	0.8764	Pt-ACR7.1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	9.38	0.9064
AT2G45360			Protein of unknown function (D...		Potri.014G098800 [exp]	10.00	0.8633
AT3G19150		ACK1, ICK4, KRP...	ARABIDOPSIS CDK INHIBITOR 1, K...		Potri.005G137500 [exp]	10.00	0.8822
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.017G075600 [exp]	11.48	0.8800
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.001G099800 [exp]	12.12	0.8948

Compare expression of checked genes

Potri.009G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.