Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33890 304 / 5e-102 unknown protein AT2G14850 267 / 4e-88 unknown protein AT2G24530 179 / 9e-53 unknown protein AT4G31440 170 / 2e-49 unknown protein AT5G67410 155 / 6e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296300 [exp] 585 / 0 AT4G33890 325 / 2e-110 unknown protein Potri.009G090400 [exp] 505 / 0 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 490 / 6e-175 AT4G33890 295 / 3e-98 unknown protein Potri.018G005700 [exp] 206 / 5e-63 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 196 / 6e-59 AT2G24530 415 / 1e-143 unknown protein Potri.003G187400 [exp] 160 / 5e-46 AT2G24530 229 / 7e-72 unknown protein Potri.001G037500 [exp] 155 / 5e-44 AT2G24530 236 / 2e-74 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011423 [exp] 345 / 4e-118 AT4G33890 294 / 3e-98 unknown protein Lus10002119 [exp] 343 / 4e-117 AT4G33890 297 / 2e-99 unknown protein Lus10011422 [exp] 308 / 1e-102 AT2G14850 278 / 5e-92 unknown protein Lus10020146 [exp] 207 / 3e-63 AT2G24530 346 / 4e-117 unknown protein Lus10026942 [exp] 206 / 6e-63 AT2G24530 351 / 7e-119 unknown protein Lus10042444 [exp] 202 / 9e-62 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 164 / 2e-47 AT2G24530 347 / 1e-117 unknown protein Lus10002120 [exp] 108 / 5e-29 AT2G14850 112 / 2e-31 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12767 [poplar] [flax] SAGA-Tad1 Transcriptional regulator of RNA polII, SAGA, subunit
Representative CDS sequence Show only first row Show all	>Potri.009G090500.1 pacid=42772208 polypeptide=Potri.009G090500.1.p locus=Potri.009G090500 ID=Potri.009G090500.1.v4.1 annot-version=v4.1 ATGGCATCGAATGAAATGTATAGTAGAATTGATACTTTAGAGCTCAAGTCTTTGATTCTTAAAAAGATTGGACATCAAAGAGCCGATAAATACTTTGATG AGCTTACACAATTGTTTAGTTTGAAGATTACCAAATGTGAATTTGATAAGCTTTGTATTAGGATAATTGGTAGAGAAAATATCCCTCTTCACAACCGCCT TATTAGATCTATTCTCAAGAATGCTTGCCTTGGAAAAGTTCCACCACCCAAAGGTGTAAGAAGAGCAGGAAGCAACCTTACTGTCAAAACCACAAATGGA CATCAGAGAAATTATCTCCAGTCACTTTACAGGGACGCCTTTCCCTCTTCCCCTCGCAAGGGAAGATCACCTGTTAATCGAGATCGCAAGTTTAGGGACC GCCCAAGTCCTCTGGGCCCACTTGGTAAGCCCCAAAGCATGGCATGTGAGGAATTGAATTCAAGGGCCCAAGAGCAGCAAAGCGCAACAGAATTGCATTC ACTTGGTAGCAGACCTCCAATTGAAGTTGCATCTGTGGAAGAGGGAGAAGAGGTTGAGCAGATGGCAGTAAGCCCTGGTGTTCAAAGTAGAAGTCCGGTT ACTGCTCCTTTTGGTATTTCACTGAATCCGGGTGGATCTCGTAAAGCTCTTTCAAATATTTCTATAGGGAGCAATTACATTCCAGAGACCTGTCTAAACA GTGGAGAGCTGCCAGACACTAGATCATTAAGAAGTCGATTGGAGCGGAAGTTGGAGATGGAGGGCATTGGTGTGTCTTTGGACTGTGTTAACGTGCTAAA TATAGGGTTGGATGCGTATTTGAAGAGGTTGATCGAGCCTTGTATGGCTCTAGCTGGCGCAAGGTGTGATAGTGAACAGTTGAAAGGGGCAAATGGTCAG TTCATTCCTGGTCTGAAGGAAACATTACCTGGGAGATATGTAAAGAGACAGACAGAATCAGTTAATGCATCTATGTTGGATTTTCGTGTTGCAATGGAGT CAAATCCACAAATACTCGGGGAGGACTGGCCTGTGCAACTTGAAAAAATCTCCTTGAGTGGTTTTGAAGAGTGA
AA sequence Show only first row Show all	>Potri.009G090500.1 pacid=42772208 polypeptide=Potri.009G090500.1.p locus=Potri.009G090500 ID=Potri.009G090500.1.v4.1 annot-version=v4.1 MASNEMYSRIDTLELKSLILKKIGHQRADKYFDELTQLFSLKITKCEFDKLCIRIIGRENIPLHNRLIRSILKNACLGKVPPPKGVRRAGSNLTVKTTNG HQRNYLQSLYRDAFPSSPRKGRSPVNRDRKFRDRPSPLGPLGKPQSMACEELNSRAQEQQSATELHSLGSRPPIEVASVEEGEEVEQMAVSPGVQSRSPV TAPFGISLNPGGSRKALSNISIGSNYIPETCLNSGELPDTRSLRSRLERKLEMEGIGVSLDCVNVLNIGLDAYLKRLIEPCMALAGARCDSEQLKGANGQ FIPGLKETLPGRYVKRQTESVNASMLDFRVAMESNPQILGEDWPVQLEKISLSGFEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33890			unknown protein		Potri.009G090500 [exp]	0	1
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Potri.004G209100 [exp]	7.93	0.8415
AT4G33890			unknown protein		Potri.009G090400 [exp]	8.42	0.7800
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.007G110100 [exp]	8.42	0.8540
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	11.31	0.8399
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.008G094500 [exp]	11.48	0.7561
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.006G131800 [exp]	12.00	0.8294
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.003G210500 [exp]	13.74	0.8277
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	13.78	0.8447	Pt-EIL3.2
AT1G36990			unknown protein		Potri.005G172100 [exp]	16.30	0.8092
AT3G60850			unknown protein		Potri.014G070200 [exp]	23.45	0.8175

Compare expression of checked genes

Potri.009G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.