Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49870 450 / 6e-147 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296700 [exp] 1061 / 0 AT1G49870 426 / 2e-137 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013902 [exp] 518 / 6e-171 AT1G49870 454 / 2e-145 unknown protein Lus10002116 [exp] 424 / 3e-138 AT1G49870 457 / 4e-150 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G090900.1 pacid=42772516 polypeptide=Potri.009G090900.1.p locus=Potri.009G090900 ID=Potri.009G090900.1.v4.1 annot-version=v4.1 ATGGATCTCGGGTGCTTAGATTTGGGATGCATCTCTGTGTTAGACAAGCACAGCAGCGACAGTTTTGTTCTTGATCCTGTTAACAAGGAATGTGATTCGC GGGAGAAGGTTTCTTCGGGTTCTAAGATCGGGAAGAATAAATCGCCAAAAGGGACTGGCCAATCAGCATTGAATTCTCTAAGCAAATTTACATCCCAGAT TAAGAAGCCTTCTCACCGTAAGAATTCTCCTATCAACTGGTTCCCACGCAAGAAGGGGGACTCCTACTTGCAGAGGAAAATCAAAATGCTGCAGGAATTG GATGGGATGAATATGACTCTTGATGAGGCGCTTGGTGATTCAAACCCACATTATTCTAGAGTCTTGAGAGAGAAAATTGAAGCAAGAGAGGCTGCAAACA AAGCGGTGGAGGCTCGAAAAGCTGCACTGGTGGAAGCATCTTGGTGTCGGATACTAAAAGCTGCCAGGATCCAGAGTAAAGAAGCAGAAGAACTGCTGCT TAAAGCAGAGAAAAATGCAGCCGAAGCTTTTGAAGCTGCAAAAGCTATGGAAGTAATCATGTTCGATATACCAAATAGTCCTCGGATGCCTTGTCAAGTT CAAAAATCTACTGTTAAAGTAGGGGGGCCTACTGCTCATACGGTCACAGCATCTTTTGCAACTGTATTTGAGGTAGATAAACAAGTAGCTGCAGCGGTCA AAACTGCATTCACCAAGCTTGCAAACTGTCCTACTTTTAACAAAGAAGAATTCAAAGATCTGCTGCGAAAAATCAGTCAGAATCCAGATATGGATGATAG TAATTCTGAATTTTCAGAGTGTGAATCAGAGTCTGGGTCAGAATTTGAACTGATATCTAAAGACATGGATTGTAAGTTTCCCAGTCCTGGGACAAGAATC AGTAAATATAAGAGAAGACAGTCTTTGGACAAGTTGGATATGATCAAGCTTGTGGATGTGATGCTTGAGAGGCTTAGATGTTTGAATGAAGACGAACTTT CTTCTTTGGCAACTATCGTTGCTACATGCGGTTTAAATGCTGCCTTGGCAGAAGTAGAAAACAGTAAGGTGCATGATCCAGTCTTTGCTGCTGATTATAC CTCAAGTCAAGCACTTAACCTTCCCCGAAGAATGTCTTCTGTTGGTTCAGGAACAATGAGAAGGAACGAGGTTCGGTTGGGACTCCCAAGTCTAGACAAG TTCTTGGTCAAGCACATGTCAAAACTTGAAAGAGAGGTGCAAGAAGCTAAGGATAGGAGGAGGAATGAACTCAAGGCTGGGAATCAAGGGAATACGGATA AAACTGGTGATGGAAAGGTCAATATAGATGGTAAGAAGACTTCTAAGAGCATTCCTGATCTCGGAAGTATTCTTATGAAGCATTCCTCAAAGTTAGAAAA GGAGATTGAAGAAGCAAAGAAGCATTCAAGAAAAAGTTTTGAAATTATTTCGAAGAAACCGGTCAGTGACTTGATTACATCCGAGGGCATTTCTGACCTG GGAAGTATATTGATTAAGCATCCGTCAAAGCTTGAAAAGGAAGTTCTAGAGATAAGAAAAAACTCAGGAAAAACATTTGACATGGATGGCAAGGACCTCG GAGGAGCAATTAATGGTCAAAGAAAAGATGTTCCAGAAGTACCAAGCCTGGATAAGTTTCTGGTAAAACATGTTTCAACACTAGAAAAGGAGGTTCAGGA AGCAAAGAACAGAAAGAAAAATGAATCAGTTGAGAAAGGCAGAGTAGAGAAGGAAAATGTGGACTTGAATAAAGAAGAGAATATACTGGAAGGAGAGAAA ATGCAAGCATTGTCATCGGGAAGCAACTGTGGAAATTACAGGCACCAAAACAAATATGGAGGAAATGTTACTGCAGGTTGTGAGGGCCTGGACAGAGTTC TGGTCAAGCGTGTCTCTAGACTAGAGAAAGAGAAAACGGCATCGAGTCTAAACCAAGAAGAGATGAATGTGAAAAGAAGTGGCAGAAAAGTGCTTACGCA GACAAATGAAGGTGATTTGGACCAAATTTTGGTTAAACAAAAATCAAGGCTCGAAAGAGAGAAGATGGCTTCTGCTCAGCAATCTGGAGAAGTGCCAGCT AGGCTCTCTGTATCTCGTAGAGAAGCAAGGGAGAGAGAGTTGCAAGAAGCATGGGGAGGCTTAAGTTTAGGAAACTCCATTCGCCCACATCTCTCCAAAC TTGAAAAGGAAAAGGCGGCTTGGATTAAAGCTGAAGAGGAGGCAAGAAGGCAAGCCACGGAGGAAGTGTAA
AA sequence Show only first row Show all	>Potri.009G090900.1 pacid=42772516 polypeptide=Potri.009G090900.1.p locus=Potri.009G090900 ID=Potri.009G090900.1.v4.1 annot-version=v4.1 MDLGCLDLGCISVLDKHSSDSFVLDPVNKECDSREKVSSGSKIGKNKSPKGTGQSALNSLSKFTSQIKKPSHRKNSPINWFPRKKGDSYLQRKIKMLQEL DGMNMTLDEALGDSNPHYSRVLREKIEAREAANKAVEARKAALVEASWCRILKAARIQSKEAEELLLKAEKNAAEAFEAAKAMEVIMFDIPNSPRMPCQV QKSTVKVGGPTAHTVTASFATVFEVDKQVAAAVKTAFTKLANCPTFNKEEFKDLLRKISQNPDMDDSNSEFSECESESGSEFELISKDMDCKFPSPGTRI SKYKRRQSLDKLDMIKLVDVMLERLRCLNEDELSSLATIVATCGLNAALAEVENSKVHDPVFAADYTSSQALNLPRRMSSVGSGTMRRNEVRLGLPSLDK FLVKHMSKLEREVQEAKDRRRNELKAGNQGNTDKTGDGKVNIDGKKTSKSIPDLGSILMKHSSKLEKEIEEAKKHSRKSFEIISKKPVSDLITSEGISDL GSILIKHPSKLEKEVLEIRKNSGKTFDMDGKDLGGAINGQRKDVPEVPSLDKFLVKHVSTLEKEVQEAKNRKKNESVEKGRVEKENVDLNKEENILEGEK MQALSSGSNCGNYRHQNKYGGNVTAGCEGLDRVLVKRVSRLEKEKTASSLNQEEMNVKRSGRKVLTQTNEGDLDQILVKQKSRLEREKMASAQQSGEVPA RLSVSRREARERELQEAWGGLSLGNSIRPHLSKLEKEKAAWIKAEEEARRQATEEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49870			unknown protein		Potri.009G090900 [exp]	0	1
AT4G14330			P-loop containing nucleoside t...		Potri.008G169000 [exp]	2.00	0.9755
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.008G195800 [exp]	3.16	0.9629
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	3.87	0.9732
AT3G15550			unknown protein		Potri.003G058600 [exp]	3.87	0.9715
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	4.47	0.9742
AT4G14330			P-loop containing nucleoside t...		Potri.010G069400 [exp]	8.12	0.9664
AT5G15510			TPX2 (targeting protein for Xk...		Potri.004G118700 [exp]	8.48	0.9725
AT2G33400			unknown protein		Potri.010G067300 [exp]	9.53	0.9649
AT5G16250			unknown protein		Potri.008G078000 [exp]	10.95	0.9643
AT4G31840		AtENODL15	early nodulin-like protein 15 ...		Potri.006G184100 [exp]	11.31	0.9594

Compare expression of checked genes

Potri.009G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.