Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49850 109 / 2e-28 RING/U-box superfamily protein (.1) AT2G15580 69 / 9e-14 RING/U-box superfamily protein (.1.2) AT1G68070 66 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G71980 63 / 3e-11 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09100 60 / 5e-11 RING/U-box superfamily protein (.1) AT1G60360 62 / 6e-11 RING/U-box superfamily protein (.1) AT1G35630 61 / 1e-10 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT3G55530 61 / 2e-10 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G35625 59 / 2e-10 RING/U-box superfamily protein (.1) AT3G48030 61 / 3e-10 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297000 [exp] 367 / 1e-128 AT1G49850 107 / 2e-27 RING/U-box superfamily protein (.1) Potri.018G114500 [exp] 66 / 6e-13 AT2G15580 161 / 3e-50 RING/U-box superfamily protein (.1.2) Potri.006G190300 [exp] 66 / 1e-12 AT2G15580 170 / 2e-53 RING/U-box superfamily protein (.1.2) Potri.006G274700 [exp] 67 / 3e-12 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.009G034700 [exp] 62 / 4e-11 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 61 / 8e-11 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 59 / 1e-10 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.010G201500 [exp] 61 / 2e-10 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 59 / 3e-10 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002113 [exp] 237 / 3e-77 AT1G49850 133 / 2e-37 RING/U-box superfamily protein (.1) Lus10013899 [exp] 89 / 7e-20 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042443 [exp] 64 / 4e-11 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10041134 [exp] 62 / 7e-11 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10036466 [exp] 62 / 1e-10 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10030120 [exp] 59 / 3e-10 AT2G15580 139 / 2e-41 RING/U-box superfamily protein (.1.2) Lus10014823 [exp] 61 / 4e-10 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 59 / 8e-10 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10002706 [exp] 59 / 1e-09 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10000513 [exp] 59 / 1e-09 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.009G091200.1 pacid=42770755 polypeptide=Potri.009G091200.1.p locus=Potri.009G091200 ID=Potri.009G091200.1.v4.1 annot-version=v4.1 ATGACGAGCGCATCGGAGTTGTTTTATCAAAGAAGGTCGCGAGTGAGCCGAGCCAATACCGATCTAGGGCTCGAACCTTCTGTTTCTGACCGTATTTTTT ACCAAAATTACAATCGCCGCCATCACAATAATCATAATCACCGTCATGATTTAGACGGCTGTGATCCTCTTCGCAGATCTCCTCACGTGCGGCACCCCTG CCAGCGCTTTCTCTCTGAACGTGCCTCATCTCGACTTGATCAAGGTACCAGTCAATTTGTACCAAGCAACAATAACAGCACTGAAACTCTAAGCAGCACA AGCCGGCCAAGAGTGACTGTAAATGACAGACTTCCTGGAGCTGTGGTACTTGCAAGGGCAAGGCTTCTCGAAAGGTTAAGAGGAGTTTCACTTTCTGGAA ACAGGCAAAGTGGCCGGGCTTTTCTTGGCATCTATAACAGGGAGTATACGCTTGGCGATGAATTGAGGGTTGTTGATGCAGGGGACTGGGGAACTGACAT TTCTACAGGGTTGTTTGCTGGAGGTTCCTCTTCCGATGACTCAACCCTTCAAACAGAAAGACTTCACACCGTGCAGGAATCACACAAGAAGAAACCACCT GGTCTAACCCAAGATGCCCTTCACTGTTTGCAATCAGAGGTATTTAGCAGCGTAGAGAAGGGTATCGAAGGGGGTGTATCTCAGGTGTCATGGGATTGTA GTATATGTCTCGAGAGTTTCACAGAAGGAGATGAACTTATTCGGTTGCCATGTGAGCATAGATTCCACTCTGCTTGCTTGGATCCTTGGGTCCGGACATG CGGTGACTGCCCATATTGTCGAAGAGATGTAGTTGTAACTAATGACTGA
AA sequence Show only first row Show all	>Potri.009G091200.1 pacid=42770755 polypeptide=Potri.009G091200.1.p locus=Potri.009G091200 ID=Potri.009G091200.1.v4.1 annot-version=v4.1 MTSASELFYQRRSRVSRANTDLGLEPSVSDRIFYQNYNRRHHNNHNHRHDLDGCDPLRRSPHVRHPCQRFLSERASSRLDQGTSQFVPSNNNSTETLSST SRPRVTVNDRLPGAVVLARARLLERLRGVSLSGNRQSGRAFLGIYNREYTLGDELRVVDAGDWGTDISTGLFAGGSSSDDSTLQTERLHTVQESHKKKPP GLTQDALHCLQSEVFSSVEKGIEGGVSQVSWDCSICLESFTEGDELIRLPCEHRFHSACLDPWVRTCGDCPYCRRDVVVTND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49850			RING/U-box superfamily protein...		Potri.009G091200 [exp]	0	1
					Potri.017G077100 [exp]	3.74	0.8569
AT5G18150			Methyltransferase-related prot...		Potri.019G035000 [exp]	5.47	0.8424
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.006G204300 [exp]	6.55	0.8612	B13.1
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	7.48	0.8343
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.001G218800 [exp]	8.12	0.8158
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220400 [exp]	8.24	0.8507
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	8.24	0.7938
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Potri.009G168600 [exp]	10.67	0.8405	CDPK3.2
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	12.48	0.8134
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	16.12	0.8129

Compare expression of checked genes

Potri.009G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.