Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43400 338 / 4e-108 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G13210 338 / 1e-107 Uncharacterised conserved protein UCP015417, vWA (.1) AT3G24780 335 / 5e-106 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43390 323 / 4e-102 Uncharacterised conserved protein UCP015417, vWA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165200 [exp] 369 / 1e-119 AT5G13210 851 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041147 [exp] 280 / 3e-85 AT5G43400 823 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10021875 [exp] 266 / 9e-80 AT5G43390 803 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016990 [exp] 156 / 7e-44 AT5G43400 318 / 7e-106 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10013399 [exp] 116 / 3e-29 AT5G43400 261 / 2e-83 Uncharacterised conserved protein UCP015417, vWA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11443 [poplar] [flax] DUF2828 Domain of unknown function (DUF2828)
Representative CDS sequence Show only first row Show all	>Potri.009G091400.1 pacid=42771607 polypeptide=Potri.009G091400.1.p locus=Potri.009G091400 ID=Potri.009G091400.1.v4.1 annot-version=v4.1 ATGGCTCCTTCTCCTTCCTTTCTCATTGGCCCACCAGAGAGTTACCGCCGTGCCCCACTCACCACCACCGCAAGAACTCAAAAACCACAAACAAAAGCTC CTGTATGGTACCCTCATATGGAGATTCCTACCTTAACCCCTTGCCAGTTTCTCTTCTTCAAAATCACTCCCAGTACAACCCCTGAAACTCTATTTCGCTG GTTAGAACGTGCCTGGAATGAAGACCCAAATACCACTCTCAAGCTCATTTGCTATCTTGGATTAGCCACCATAAAGGGAAAACCTAATAAATACGCGTTC TTTAACTCGGTTCTTTGGCTTCATAAGTACCAACATTATGTTCTTGCATCAAATCTTGCAGCCTTGGCAAGTTTTGGGTACTTGAAAGATCTTCCGGAAA TCTTGTATCGAATCTTGGTGTTTGAGATGGTAAATGGAGGTTACTGTCAAAGCAGAATGTTGGATCAAGGAGAGAACGTGAAAATGGATCAGATCGAGAA TGAAGAGATGGAGAAGGAGGAAACGAGGGTTCTGAGGAGGGAGAAAGACATTTTTTGGGCTGAATGTGCAGTCTTTTTTCACCGAAATGTTTCAGCATAT CATTTCTTGCACAATTGTGTTGCAGATATTTATGCAGATTTGCTGAAGTCTGATATCGAATTCTTGAACTTGGGTGAGGTTGAAAAGATTAGTTTGGCTG CAAAATGGTGTCCTTCTGTCAATAGTTTCTATGATAGGAGAACTCAGATCTGTGAAAGCATTGCAAAGGCACTTTTCCCTTTCGATTCAGACCCCGGGTA CTTTGTTATTGAAAATGCTCACTATGTTTATAGGGTTCGAAATCGCTTGATGAAAGAAGTTCTTGTTCCTCTTCGTAAAGCCCTTGTGAGGAGAACAAGG TGTGATCCAATCACACACAGGCCTTTTAGACCTATTGTGTCAACCGCTGTGAAGAAAATGTATTCAGGGCTTTGGACTGCGGATTACAATAAAAGGTTTA ACGTTTACGTGGAGATTGCAGCAAGAACAACGAAGAAAAAAAAGTTGTTGCTTCCTCATGAAATTGTAGCTTCTTTGAGGGATAAAAGTAGCAGCATGGT TGCAGAGTCTAAATGGGAAAGCCTTGTTAACTACTTGAAAAAGAAAGGGAGCTTGAAGAATTGTTTGGCAGTTTATGGGATATCAAGGGACATGAACAAA ATGCAGAAGGATATTTGTGTATCGATGGGGTTGTTAGTTTCAGAACTCAGTGAAGAACCATGGAAGGGCAAGATTGTATCTTTTGGTGATGATCCTAAGA TTCGCATGATTCATGGAAGTAATCTTCCAGCCAAGATTGAGTTCATGAGGCAACTGGACTATAGTAAGGTTGAAAATATTAAGAGGGTGTTTGACCAAAT ATTCGAATTTGCTCTTGCGGAGAAGATTAGCCAAGAGAATATGCCACAAAAGATATTTGTTTTCACTGACATGGGATTACAGCAGGTATCTGCTTGCTTG TGGGGCATGTGGGGGAGTTATAGGAGAAGGAGAGGGTGTACAACATTGCCAGAGATTGTATTTTGGAATCTAAGAGGTGAAACTGGTGTCTTGAATTTCC CAGCAAGGAACTTGAATAGGGTGACGATGGTTAATGGGTTTTCGAATGATTCATTGGCAGCTTTGCTGGAGAGAGATGTGGTTCCAACTCTAGAAGATTT GATGAGGTCAATTGGGCCAGATAATGTTTTGAAATCAACCATTTCTGGAGATTTGTATGACAATTTACTCGTATAA
AA sequence Show only first row Show all	>Potri.009G091400.1 pacid=42771607 polypeptide=Potri.009G091400.1.p locus=Potri.009G091400 ID=Potri.009G091400.1.v4.1 annot-version=v4.1 MAPSPSFLIGPPESYRRAPLTTTARTQKPQTKAPVWYPHMEIPTLTPCQFLFFKITPSTTPETLFRWLERAWNEDPNTTLKLICYLGLATIKGKPNKYAF FNSVLWLHKYQHYVLASNLAALASFGYLKDLPEILYRILVFEMVNGGYCQSRMLDQGENVKMDQIENEEMEKEETRVLRREKDIFWAECAVFFHRNVSAY HFLHNCVADIYADLLKSDIEFLNLGEVEKISLAAKWCPSVNSFYDRRTQICESIAKALFPFDSDPGYFVIENAHYVYRVRNRLMKEVLVPLRKALVRRTR CDPITHRPFRPIVSTAVKKMYSGLWTADYNKRFNVYVEIAARTTKKKKLLLPHEIVASLRDKSSSMVAESKWESLVNYLKKKGSLKNCLAVYGISRDMNK MQKDICVSMGLLVSELSEEPWKGKIVSFGDDPKIRMIHGSNLPAKIEFMRQLDYSKVENIKRVFDQIFEFALAEKISQENMPQKIFVFTDMGLQQVSACL WGMWGSYRRRRGCTTLPEIVFWNLRGETGVLNFPARNLNRVTMVNGFSNDSLAALLERDVVPTLEDLMRSIGPDNVLKSTISGDLYDNLLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43400			Uncharacterised conserved prot...		Potri.009G091400 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Potri.001G260900 [exp]	16.55	0.7788
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.016G019800 [exp]	19.89	0.7338
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	26.88	0.7516
AT1G06320			unknown protein		Potri.005G202500 [exp]	31.70	0.7318
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	56.14	0.7297	Pt-BIP.2
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.006G103400 [exp]	56.74	0.7065
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Potri.010G025100 [exp]	70.43	0.7080
AT3G63430			unknown protein		Potri.002G046700 [exp]	80.04	0.6977
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	87.66	0.6860
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.006G179100 [exp]	152.87	0.6682

Compare expression of checked genes

Potri.009G091400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.