Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02860 1146 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 540 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 276 / 3e-80 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G31400 259 / 6e-74 GUN1 genomes uncoupled 1 (.1) AT4G31850 238 / 9e-66 PGR3 proton gradient regulation 3 (.1) AT1G09900 229 / 4e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G61990 229 / 6e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 228 / 9e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 227 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 222 / 2e-62 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297300 [exp] 1451 / 0 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 573 / 0 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 262 / 3e-74 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 256 / 7e-74 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 256 / 4e-73 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G264800 [exp] 256 / 6e-72 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.007G123900 [exp] 249 / 4e-69 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 244 / 5e-69 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 247 / 6e-69 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013894 [exp] 1033 / 0 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 1028 / 0 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020002 [exp] 550 / 0 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 548 / 0 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 519 / 1e-172 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 508 / 3e-168 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 260 / 2e-74 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10026206 [exp] 256 / 1e-71 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 243 / 1e-68 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022290 [exp] 237 / 5e-67 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G092100.2 pacid=42771588 polypeptide=Potri.009G092100.2.p locus=Potri.009G092100 ID=Potri.009G092100.2.v4.1 annot-version=v4.1 ATGACAGAGAAACTAGCTCTCCCTCTTCTCCTCACAAACCCACCTCCAACAAAACTCTTACTGCCTCTCCAATCTCACCTCCATCAACAACAGCTAAAAC TAACAACACCCACTTCACCACCACCACAACATGGCACCCCACCTATGCAGGACTTCCTTTTCAAGCAAAGCCCCAATCTTTCCAAACCCATCAACCCGCA AACCCAACCTGATCTATTTCCTATCCCAAGAAACCGAACCCGAATTGGCAAGGCCTGTGACCCTAACCGTGGCAAACCCTGGACCCACCGTCGTCTCTCC CTTCAAGGTCAGCGAGTTCTAGATTCTTTAAATGACCCTTCTTTCGAAACCAGTGAATTAGATAAAATCTTGAGTCTTTTATTTGATTACTATAAAGAAG AGTTGAGTGTATGTAGTGGTGGTAAGGAGAGGTTAAGTAATGATGTTTTGGGTATTATTAAGGGTTTAGGGTTTTATAAAAAAAGTGACCTGGCTATGAG TGTGTTTGAGTGGTTTAAGAATAGGAATGGTTATGAATCTGTCTTGAGTAATTCAGCTGTGGCTGTGATTATTAATATGCTTGGTAAAGAAGGAAAAGTT TCGGTGGCAGCATCTTTGTTGAATAATTTGCATAAAGATGGGTTTGAACCTGATGTTTATGCGTATACATCTTTAATAACTGCTTGTGTTAGTAATGGGA GGTATAGGGAAGCTGTGATGGTTTTTAAGAAGATGGAGGAAGAAGGGTGCAAACCAACTTTGATTACTTATAATGTGATTCTGAATGTGTATGGAAAAAT GGGTATGCCTTGGAACAAGATTACAGGTCTGTTTGAGGGAATGAAGAATGCTGGGATTTTGCCGGATGAGTATACATATAATACGCTGATAACCTGTTGT AGACGAGGATCTTTGTATGAAGAAGCTGCTGCGGTTTTTGAGGATATGAAATCGATGGGGTTTGTGCCTGATAAGGTCACTTATAATACTTTATTGGATG TTTATGGGAAGTCTAGGCGGATTAAGGAGGCGATCGAGGTATTAAGAGAAATGGAGGTCAATGGATGTTCACCAAGCATTGTGACATATAATTCGTTGAT ATCTGCTTATGCAAGGGATGGTCTGTTGGAAGAAGCAATGGAGCTTAAAAACCAGATGGTTGAAAGAGGGATTAAACTGGATGTTTTTACTTACACTGCA ATGTTGTCAGGATTTGTGAGGACTGGTAAGGATGAGTCTGCAATGAGGGTTTTTGAGGAAATGAGAACTGCAGGTTGCAAACCTAATATTTGTACTTTCA ATGCCTTGATTAAGATGCATGGTAACAGGGGAAAGTTTGCAGAAATGATGAAGGTTTTTGAGGAGATCAAAATTTGCTGCTGTGTACCTGATATTGTTAC TTGGAATACCCTTCTAGCAGTGTTTGGGCAAAATGGGATGGACTCAGAAGTGTCTGGAGTTTTCAAGGAGATGAAGAGGGTTGGCTTTGTACCGGAGAGG GATACCTACAACACCCTAATCAGTGCGTACAGTCGGTGTGGTTCATTTGACCAAGCCATGGCTATGTACAAGAGAATGCTGGATACTGGGATCACACCTG ATCTTTCCACCTATAATGCTGTTTTGGCAGCATTAGCTCGAGGAGGGCTATGGGAACAGTCAGAGAAAATACTTGCTGAAATGCAAGATGGTATGTGCAA GCCCAATGAACTGACACACTGTTCTTTGCTTCATGCTTATGCCAATGGCAAGGAGATTGGACGGATGCTTGCTCTTGCGGAGGAGATATGCTCTGGTGTA ATTGAACCTCATGCTGTGCTCTTGAAGACCCTTGTTTTAGTTAATAGTAAATGTGACCTCCTATTAGAAGCTGAGCGTGCATTCCTGGAGTTGAAGAGAA AAGGCTTTTCACCTGACTTGAGTACTCTGAATGCCATGATTGCTATTTACGGCAGGAGGCAGATGGTAACCAAAACAAATGAGATCTTGAACTTCATGAA AGAGAGTGGGTTCACTCCTAGCTTGGCAACTTACAATAGTTTGATGTATATGCACAGCCAATCAGAGAACTTTGAGAGGTCAGAAGAAGTTTTAAAAGAA ATCCTTGCAAAGGGAATAAAACCAGATATAATTTCATACAACACCGTAATTTTTGCGTATTGCCGAAATGGGCGGATGAAAGAGGCTTCACATATATTCT CAGAAATGAGAGAATCTGGGCTTATTCCAGATGTAATCACATATAATACTTTTGTTGCAAGTTATGCAGCTGATTCAATGTTTGAGGAGGCTATTGATGT TGTTTGCTACATGATCAAGCATGGATGTAAACCGAACCAGAATACATACAACTCAGTCATTGATGGATACTGTAAACTTAATCGCCGGGATGATGCAATC AAGTTCATAAGCAGCCTTCATGAGCTTGATCCACACATTTCCAGGGAGGACGAGTGCAGGTTATTAGAACGTTTAACCAAATGGTCATAG
AA sequence Show only first row Show all	>Potri.009G092100.2 pacid=42771588 polypeptide=Potri.009G092100.2.p locus=Potri.009G092100 ID=Potri.009G092100.2.v4.1 annot-version=v4.1 MTEKLALPLLLTNPPPTKLLLPLQSHLHQQQLKLTTPTSPPPQHGTPPMQDFLFKQSPNLSKPINPQTQPDLFPIPRNRTRIGKACDPNRGKPWTHRRLS LQGQRVLDSLNDPSFETSELDKILSLLFDYYKEELSVCSGGKERLSNDVLGIIKGLGFYKKSDLAMSVFEWFKNRNGYESVLSNSAVAVIINMLGKEGKV SVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCC RRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTA MLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPER DTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGV IEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKE ILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAI KFISSLHELDPHISREDECRLLERLTKWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	0	1
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.001G297300 [exp]	1.00	0.9616
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	4.69	0.9573
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.019G100800 [exp]	7.00	0.9381	Pt-RMA1.1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	7.74	0.9249
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	8.12	0.9127
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	8.48	0.9360
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.002G010900 [exp]	11.00	0.9343
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	11.74	0.9415
AT1G51550			Kelch repeat-containing F-box ...		Potri.010G252200 [exp]	13.03	0.9359
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	13.26	0.9454

Compare expression of checked genes

Potri.009G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.