Plant FIBer expression Database

AGP9.1 (Potri.009G092300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol AGP9.1
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G297466
[exp]
46 / 4e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G092300.1 pacid=42772067 polypeptide=Potri.009G092300.1.p locus=Potri.009G092300 ID=Potri.009G092300.1.v4.1 annot-version=v4.1
ATGATGCTAAAAAAAGCTGTCATCCTTCTTTCTTTGATCTGCATTTCGATTGCTGGTGTTTCTGGTCAAGCACCAGCAACGTCACCAACAGCAACACCAG
CACCACCCACACCAACTTCTTCTCCACCGCCAGCAACCACTCCTCCACCAGTTTCAGCCCCACCTCCTGTTACCCAATCTCCACCTCCAGCTACCCCTCC
TCCAGTTTCAGCCCCACCACCTGCCACCCCTCCTCCCGCAACCCCACCACCAGCAACTCCTCCTCCCGCCACCCCACCACCAGCAACCCCACCACCTGCT
ACTCCTCCACCAGCAACCCCTCCTCCCGCTGTTCCTCCACCAGCTCCATTGGCAGCTCCACCAGCTCTTGTTCCAGCTCCAGCTCCCAGCAAGCCTAAGT
TGAAGTCTCCAGCTCCATCTCCCCTGGCATTGAGTCCTCCATCTCCACCAACTGGCGCTCCTGCTCCAAGTTTGGGTGCTTCCTCTCCTGGACCCGCTGG
AACCGATATGAGTGGAGTAGAGAAGATGGGGTCCGTGCAGAAGATGGTCCTGAGCCTGGTCTTTGGATCAGCATTCTGGTTGCTAACTTAG
AA sequence
>Potri.009G092300.1 pacid=42772067 polypeptide=Potri.009G092300.1.p locus=Potri.009G092300 ID=Potri.009G092300.1.v4.1 annot-version=v4.1
MMLKKAVILLSLICISIAGVSGQAPATSPTATPAPPTPTSSPPPATTPPPVSAPPPVTQSPPPATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPA
TPPPATPPPAVPPPAPLAAPPALVPAPAPSKPKLKSPAPSPLALSPPSPPTGAPAPSLGASSPGPAGTDMSGVEKMGSVQKMVLSLVFGSAFWLLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G092300
[exp]
0 1 AGP9.1
AT3G22070 proline-rich family protein (.... Potri.007G120101
[exp]
1.00 0.9605
Potri.001G297466
[exp]
1.41 0.9541
AT1G13730 Nuclear transport factor 2 (NT... Potri.010G157800
[exp]
4.58 0.9404
AT5G10840 Endomembrane protein 70 protei... Potri.006G264500
[exp]
5.91 0.9467
AT1G30630 Coatomer epsilon subunit (.1) Potri.011G155800
[exp]
6.00 0.9518 COPE2.1
AT4G14960 TUA6 Tubulin/FtsZ family protein (.... Potri.001G289500
[exp]
8.12 0.9408 TUA2.1
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.003G145950
[exp]
8.42 0.9102
AT5G51840 unknown protein Potri.012G132766
[exp]
9.16 0.9197
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Potri.016G088700
[exp]
9.38 0.9481 Pt-FLA11.2
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Potri.006G104400
[exp]
9.38 0.9271

Potri.009G092300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.