Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34280 775 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G61210 59 / 1e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 57 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 53 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 54 / 6e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 53 / 9e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G29260 49 / 6e-06 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT2G43770 48 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 47 / 4e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G80710 47 / 5e-05 DRS1 DROUGHT SENSITIVE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297600 [exp] 1397 / 0 AT4G34280 784 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G051500 [exp] 822 / 0 AT4G34280 541 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 54 / 4e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 54 / 4e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 54 / 4e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 52 / 6e-07 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 49 / 9e-06 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 46 / 6e-05 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.018G112500 [exp] 46 / 8e-05 AT1G80710 512 / 1e-178 DROUGHT SENSITIVE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026603 [exp] 1048 / 0 AT4G34280 777 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10013890 [exp] 1040 / 0 AT4G34280 758 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10002090 [exp] 55 / 1e-07 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 54 / 2e-07 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 55 / 3e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 55 / 3e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 54 / 9e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 52 / 1e-06 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10012230 [exp] 47 / 5e-05 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029221 [exp] 46 / 0.0001 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G092500.1 pacid=42771812 polypeptide=Potri.009G092500.1.p locus=Potri.009G092500 ID=Potri.009G092500.1.v4.1 annot-version=v4.1 ATGGCCACTGATATCCCATCCTTTAATATCCCAACCCTCGAACAAATGTACATTGATTCTTGCAAGAGGCGTGATGTCCTACCTAATACGGAAATTCTAT CTGGTTTCTTTAAGGCTGAGGTTAAAAAGTCCTGCAATGAGTTATGCAGTTTGGAGATCATCTTGGACCATCTTAAAGATATTGACGTTCCTCCGCTTCT TGATGTATGTGCAACCATAGAAACCTCCGAGATTGAAGCAGTTGACATACGCAATGGACCATCATGCTCTTTGAATGGAGAATGTGCTTTATCTTTGATG CGTGCTTTCAATCAAAAGCTTCGAGCAGTTGATCTTCAGGATTCACCATTTGGAAAGGACTTCTTGCGGGAGCTCTCGCAGAGAGGTTTGGCATGCCAAA TTTTGAATTTGAGGTCTTCTCATTTCCGGAAGCTGAACATGGCAGGGAAATTCATGCAAATACATACTCTCAACCTTGATTTTAGTACTTCACTAACAAG CTTCCTGGAGGATTGTTTTACTTGCATGCCCAATCTAATTTGCCTCTCAATGTGTGAGACAAGAGTTGCAAATCTATGGACAACTATTTCAGCACTTTCT AAACTCTCTTGTTTGGTAGAACTTCGGTTTCAGAAGTGGCTATGCAATGATAGTGCCTCACCGTCAGCATCTTCAGGTGGAAATTTGGAGGACCAACCTG ATGTTGGTCTGCCAATCAGCTGTACTGACATTGGAGAACAGTTGACTGATATTGAGGAAGAAACATATCTTAACCCAGGCACAGACGAGGCATTTAGGAA TTTGTTTTCATTCAATAATATAGCTATAAATCAACCAGTTCAAAGTATGATGGAGGATTCATCTGATGACAGTGAAGTTGATTTTTCAAGTAATTGGCGG GAATTTGGTTATACGGATTTGTTGGCCAATTTTTCTTCTGGTTGGAACAGGCAGGTCAATCTGCAAAATGAGGTTTCTTCTGGTGCATCATTGAATCAAA AAGAGGAGTCCCTTACTGGTTCATTTGGGAGACATATTGCAGATGTTCCTTTGAAGTATATCCCTCGACATGCCTCACCAATATGCTTTGAGAAACATTA TAGAGAGTACATGATAGCGTCATTACCCAATTTGAAAGTTTTGGACAACTTACCTGTCAGAAAGATTGACAGAGAAAGGGCTGCTGTTACATTTTCACAA TACTTTGAGTACTTACCATACAATCGGAAGCATAAAGAGAGTGTTGTTAGTATCTTGCATAAGCGTGAAATAAAAGAAACTCGTTCTCATATACAGTCAA AAAATCAAAAGATTTCTTATTCTCATGGAAACTCACAATACTTTTATACCCGGTCTCTTGGTGCTGCCAAGGTGGGATCTTCTGCCTGGCCGTTCTTGCA TTCACTTTCTGTATCAGGCTGTGATTTGGGTGATGGAAGTAGGAGCTTTCGCCCCAGACAATTTGAGTACCATCCGTCTCTTTCTAGTCTAATGGTGTTT GGAACTCTAGATGGTGAAGTTGTTGTGGTCAACCATGAGAATGGGAAAGTGGTTAGGTATGTTCCATCACTTGGTGCCATGAACAGTGTGTTGGGACTCT GCTGGCTCAAGAAGTATCCATCCAAGCTCATAGCAGGTTCAGATAATGGTTCGCTAAAATTGTATGACATTGAGCACCTGCCCCCTACAGTTACAGGCAG GTATTTAGGTGCTGGTTCAATCACCTTTGATGACTTTGACCAATTGACATCTGTTCACATTAACTCCACCGACGAACTATTTCTTGCAAGCGGATACTCA AAAAATGTTGCTTTGTATGACATCAACTATGGAAGGCGCATACAGGTGTTCACTGATATGCACAGAGAGCATATCAATGTTGTCAAGTTCTCAAACCATT CCCCATCAATTTTTGCAACTTCTTCATTTGATCAGGATGTCAAACTGTGGGACTTGAGACTGAAACCAATACGACCTTGCTACACTACTTCAAGCTCTAG AGGAAATGTGATGGTGTGCTTTTCTCCTGATGATCACTATCTTCTTGCATCTGCTGTTGATAATGAGGTTCGACAACTTTTGGCTGTTGATGGGAGACTT CACTTGAGTTTTGACATAAAGCCTACAGGAAGTGACCAGAATTACACCCGTTCCTACTACATGAATGGAAGAGATTATATTATAAGTGGGAGTTGTGATG AACATGTGGTCCGTGTTTGCTGTGCTCAAACTGGAAGGCGTCTGAGAGACATATCCTTGGAGGGGAAAGGCTCAGGGACTTCAATGTATGTGCAGTCTTT GAGGGGTGATCCTTTTAGGGATTTCAACATGAGTATATTGGCAGCTCATATGCGTCCAAACTCGAAGTATGAAATTGTTAAGGTCAATTTGCTAGCATCT TGTGACAATGCCAAAGGATACTCTAAAAGCCAGGATTCCTGCCCATCCAATAGCATGGGAGGTTGA
AA sequence Show only first row Show all	>Potri.009G092500.1 pacid=42771812 polypeptide=Potri.009G092500.1.p locus=Potri.009G092500 ID=Potri.009G092500.1.v4.1 annot-version=v4.1 MATDIPSFNIPTLEQMYIDSCKRRDVLPNTEILSGFFKAEVKKSCNELCSLEIILDHLKDIDVPPLLDVCATIETSEIEAVDIRNGPSCSLNGECALSLM RAFNQKLRAVDLQDSPFGKDFLRELSQRGLACQILNLRSSHFRKLNMAGKFMQIHTLNLDFSTSLTSFLEDCFTCMPNLICLSMCETRVANLWTTISALS KLSCLVELRFQKWLCNDSASPSASSGGNLEDQPDVGLPISCTDIGEQLTDIEEETYLNPGTDEAFRNLFSFNNIAINQPVQSMMEDSSDDSEVDFSSNWR EFGYTDLLANFSSGWNRQVNLQNEVSSGASLNQKEESLTGSFGRHIADVPLKYIPRHASPICFEKHYREYMIASLPNLKVLDNLPVRKIDRERAAVTFSQ YFEYLPYNRKHKESVVSILHKREIKETRSHIQSKNQKISYSHGNSQYFYTRSLGAAKVGSSAWPFLHSLSVSGCDLGDGSRSFRPRQFEYHPSLSSLMVF GTLDGEVVVVNHENGKVVRYVPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIEHLPPTVTGRYLGAGSITFDDFDQLTSVHINSTDELFLASGYS KNVALYDINYGRRIQVFTDMHREHINVVKFSNHSPSIFATSSFDQDVKLWDLRLKPIRPCYTTSSSRGNVMVCFSPDDHYLLASAVDNEVRQLLAVDGRL HLSFDIKPTGSDQNYTRSYYMNGRDYIISGSCDEHVVRVCCAQTGRRLRDISLEGKGSGTSMYVQSLRGDPFRDFNMSILAAHMRPNSKYEIVKVNLLAS CDNAKGYSKSQDSCPSNSMGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	1.41	0.7620
AT1G08760			Plant protein of unknown funct...		Potri.007G131600 [exp]	5.09	0.7439
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.009G061000 [exp]	5.47	0.7278
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.003G032300 [exp]	6.32	0.7235	ETR1.2
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	7.34	0.6746
AT1G30760			FAD-binding Berberine family p...		Potri.011G161300 [exp]	8.94	0.7247
AT5G12470			Protein of unknown function (D...		Potri.001G256300 [exp]	20.19	0.7079
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230400 [exp]	25.03	0.6908
AT1G04700			PB1 domain-containing protein ...		Potri.003G176100 [exp]	26.30	0.5794
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	27.14	0.6287

Compare expression of checked genes

Potri.009G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.