Plant FIBer expression Database

Potri.009G092800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G14910 421 / 1e-146 unknown protein
AT5G14970 202 / 1e-61 unknown protein
AT1G63610 92 / 9e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G298200
[exp]
622 / 0 AT2G14910 419 / 1e-145 unknown protein
Potri.005G250000
[exp]
86 / 3e-18 AT1G63610 441 / 7e-156 unknown protein
Potri.002G011000
[exp]
79 / 3e-16 AT1G63610 431 / 3e-152 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026601
[exp]
442 / 2e-154 AT2G14910 396 / 9e-137 unknown protein
Lus10013888
[exp]
411 / 1e-141 AT2G14910 380 / 8e-130 unknown protein
Lus10032180
[exp]
155 / 8e-44 AT5G14970 327 / 4e-111 unknown protein
Lus10014506
[exp]
152 / 3e-42 AT5G14970 329 / 5e-111 unknown protein
Lus10013233
[exp]
94 / 4e-21 AT1G63610 389 / 1e-135 unknown protein
Lus10030753
[exp]
93 / 6e-21 AT1G63610 397 / 6e-139 unknown protein
Lus10016008
[exp]
84 / 7e-18 AT1G63610 409 / 1e-143 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05542 DUF760 Protein of unknown function (DUF760)
Representative CDS sequence
>Potri.009G092800.4 pacid=42771934 polypeptide=Potri.009G092800.4.p locus=Potri.009G092800 ID=Potri.009G092800.4.v4.1 annot-version=v4.1
ATGGCAACCTTTCTCTCCTCTTCTTCTCTTCCTCTTCCTCTGCTCTTCTCCTCTAATCACTATCCACATCAGACGCCGCCATCTTTCTCTCTCTCCTTCC
CCTTCTCTCACCCTCTTCGCGCCACTGTTACTGCAAATTCTAGAAAAATCAAAACCGTAATCCTTGCTTCGCCTGCTTCAGATTCTTCCTTCGATGGATT
CGAGTTTAATCGAGAGTCTGCTGATAAGAAATCAGTTCTCTCAGATTTGATACAAGAGATAGAGCCACTAGATGTGAGCCTTATCCAGAAAGACGTTTCA
CCTACAACATTGGATGCTATGAAGAGGACCATCTCAGGCATGTTGGGCTTACTTCCATCAGACCGGTTTCAAGTGTTTATCGAGGCTTGGTGGGAATCTC
TCTCAAAGTTATTGGTCTCTTCAATGATGACAGGTTATACGCTGCGGAATGCTGAGTACAGGCTTTGCCTTGAAAGAAACCTTGATATACACGAAAAAGA
TCCTGAAAAGCAAGCGCAAGAAAATCCAAGAAATGAACTTCAAAGGACAGCGCTAGAAAGTGAAAAAACAAATCAAAGTTTTGGAAAGGATACTGAATTT
GAAAAAACCATGGAAGACCCATCCAATAACATTGATCTCCAAGGCCTTGGTGAAATATCCCCCGAAGCTCAACAATATATTCTTCGTTTGCAATCTTGTT
TATCTTCTGTTACAAAGGAACTACATGACGTTAAGAGGAAAAGTGCTGCTCTTCAAATGCAACAATTTGTTGGTGAAGAAAAGAATGATTTACTGGACTA
CTTAAGGTCACTACAACCAGAGAAGGTTGCTGAGTTATCAGAACCCACATCCCCTGAATTAAAAGAAACCATCCATTCTGTGGTCCATGGCCTTCTTGCA
ACCCTTTCTCCTAAGATGCATTCCAAGACTCCTCCGCAATCAGATAACACATCAACTGGATCACTAAATATTGGAGGTGATTGTGCTGAACTTGTGGAGA
ACACCTCACTTCATTTCCAGCCCCTCATTTCATTGACTAGGGACTATCTGGCGCGTCTACTTTTCTGGTGTATGCTTTTGGGGCACTACCTTCGAGGTCT
TGAGCACCGAATGGAGCTGATGGAACTTCTATCCTTGACAAGCCATGAAGAAAATGATCACTGTGAAGATGAGCAAGTTGCTTGA
AA sequence
>Potri.009G092800.4 pacid=42771934 polypeptide=Potri.009G092800.4.p locus=Potri.009G092800 ID=Potri.009G092800.4.v4.1 annot-version=v4.1
MATFLSSSSLPLPLLFSSNHYPHQTPPSFSLSFPFSHPLRATVTANSRKIKTVILASPASDSSFDGFEFNRESADKKSVLSDLIQEIEPLDVSLIQKDVS
PTTLDAMKRTISGMLGLLPSDRFQVFIEAWWESLSKLLVSSMMTGYTLRNAEYRLCLERNLDIHEKDPEKQAQENPRNELQRTALESEKTNQSFGKDTEF
EKTMEDPSNNIDLQGLGEISPEAQQYILRLQSCLSSVTKELHDVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEKVAELSEPTSPELKETIHSVVHGLLA
TLSPKMHSKTPPQSDNTSTGSLNIGGDCAELVENTSLHFQPLISLTRDYLARLLFWCMLLGHYLRGLEHRMELMELLSLTSHEENDHCEDEQVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G14910 unknown protein Potri.009G092800
[exp]
0 1
AT3G19830 NTMCTYPE5.2 ,NT... Calcium-dependent lipid-bindin... Potri.010G170300
[exp]
11.61 0.9137
AT1G79230 STR1, ATRDH1, A... ARABIDOPSIS THALIANA RHODANESE... Potri.005G095300
[exp]
17.54 0.9173 Pt-MST2.1
AT1G32200 ACT1, ATS1 ACYLTRANSFERASE 1, phospholipi... Potri.001G136600
[exp]
33.25 0.9065
AT3G27820 ATMDAR4 monodehydroascorbate reductase... Potri.001G346200
[exp]
36.94 0.9103
AT4G35040 bZIP bZIP19 Basic-leucine zipper (bZIP) tr... Potri.009G134900
[exp]
37.78 0.8960
AT2G15695 Protein of unknown function DU... Potri.004G142000
[exp]
37.88 0.8687
AT5G65250 unknown protein Potri.005G073500
[exp]
40.29 0.8998
AT4G14570 AtAARE, AARE acylamino acid-releasing enzym... Potri.008G160400
[exp]
44.54 0.8858
AT3G44890 RP19, RPL9 ribosomal protein L9 (.1) Potri.004G217000
[exp]
54.68 0.9084 Pt-RPL9.3
AT1G18390 Protein kinase superfamily pro... Potri.015G045101
[exp]
56.23 0.8993

Potri.009G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.