Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14960 1013 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT4G37390 962 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G23170 955 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 905 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT5G54510 842 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 837 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT1G28130 692 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 593 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 575 / 0 Auxin-responsive GH3 family protein (.1) AT5G13320 570 / 0 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298300 [exp] 1186 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 1026 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 837 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 834 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 833 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 667 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 660 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.002G206400 [exp] 654 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.014G095500 [exp] 418 / 1e-139 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026600 [exp] 971 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 971 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 936 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 888 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 818 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 809 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 745 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 730 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 430 / 2e-144 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 425 / 2e-142 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.009G092900.1 pacid=42771819 polypeptide=Potri.009G092900.1.p locus=Potri.009G092900 ID=Potri.009G092900.1.v4.1 annot-version=v4.1 ATGGCTGTTGATAATGCTCTTTCATCACCTCTTGGTCCTCCAGCGTGTGAGAAAGATGCTAAAGCTCTTCAATTCCTCGAGGAAATGACTAGAAATGCTG ACTCCGTTCAAGAGGATGTTTTGGCTAAAATCTTGACCCAAAACTCCGAGGTTGAGTACTTAAAACGGTTCAATCTTGATGGTGCAATTGACCGTGAGAC TTTTAAGTCTAAAATCCCCATGATTAGATACGAGGATCTTCAGCCTGAAATTCAACGAATTGCTAATGGAGATCGCTCTTCCATCTTATCAGCTCACCCC ATCTCAGAATTCCTCACTAGTTCCGGGACATCTGCTGGTGAAAGAAAGCTCATGCCAACAATTAAACAAGAGCTGGATCGTCGCCAATTATTGTATAGTT TACTCATGCCAGTAATGAACCTTTACGTGCCTGGGTTAGACAAAGGCAAAGGCTTATACTTCTTGTTTGTGAAATCTGAAACAAGAACCCCAGGAGGTCT CTTGGCTCGTCCGGTGCTTACAAGCTATTACAAGAGTGACCACTTCAAGACACGTCCATATGATCCTTACAACGTGTACACAAGCCCGAATGAGGCCATT CTTTGTGCAGATTCATTCCAGAGCATGTACACTCAGATGCTCTGTGGCCTTCTAGAGCGCGAACAAGTGCTCAGGGTCGGTGCAGTCTTTGCCTCCGGCC TCCTCCGTGCTATAAGGTTTCTCCAGCTTCACTGGCGTGAACTTTCTGATGATATCGAGTCAGGAATGCTAAACAAGAAAATCACTGACCCGACGGTCAA AGATTGCATGGTGAATATTCTGAAACCGAACCCAAAGCTCGCAGAGTTTGTCAGGATGGAGTGTGGTAAGGAAAATTGGGAAGGGATCATTACAAGAATT TGGCCTAACACCAAATATCTTGACGTGATCGTCACTGGAGCCATGGCCCAATATATCCCTACCCTTGACTACTACAGTGGTGGCTTACCTAAAGCATGCA CCATGTATGCCTCATCAGAATGTTACTTTGGGTTGAACCTCAACCCAATGTGCAAGCCATCAGAAGTTTGCTACACAATCATGCCGAATATGGCCTACTT TGAGTTTTTACCCCATGAGCCTGCTGGGATCAGTCAGGATTCAACTCCAAAACTTGTTGATCTTGCTGATGTTGAATTGGGTAAAGAATACGAGCTTGTT ATCACAACCTACGCCGGTTTATACAGGTATCGAGTTGGTGACATCCTTCGAGTTACTGGGTTCCACAACTCAGCTCCTCAATTCCATTTCGTACGAAGAA AGAATGTATTGCTCAGTATTGACTCAGACAAAACAGATGAGGCCGAGTTACAAACGGCCGTCGAGAATGCATCGCAACTTCTACGTGAATTCAACACAAG TGTAGTTGAATACACAAGCCATGCCGATACAAAGACGATTCCAGGGCACTATGTGATTTACTGGGAATTATTGGTCAAAGACTCAGCAAACTCTCCTGGT GACGAGGTACTGAACCAATGTTGCCTTGCCATGGAAGAATCTTTGAACTCGGTGTATCGACAAGGTCGAGTCGCAGATAATTCAATTGGACCACTAGAGA TACGTGTGGTTAAAAATGGTACATTTGAGGAGCTGATGGATTATGCGATTTCAAGGGGGGCATCCATTAATCAGTATAAGGTACCAAGGTGCGTTAATTT TACTCCGATCATGGAGTTGCTTGATTCTAGGGTGGTATCCAAGCATTTTAGCCCAGCTTTGCCACGTTGGGCCCCGGAAAGAAGAAGGTGA
AA sequence Show only first row Show all	>Potri.009G092900.1 pacid=42771819 polypeptide=Potri.009G092900.1.p locus=Potri.009G092900 ID=Potri.009G092900.1.v4.1 annot-version=v4.1 MAVDNALSSPLGPPACEKDAKALQFLEEMTRNADSVQEDVLAKILTQNSEVEYLKRFNLDGAIDRETFKSKIPMIRYEDLQPEIQRIANGDRSSILSAHP ISEFLTSSGTSAGERKLMPTIKQELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSDHFKTRPYDPYNVYTSPNEAI LCADSFQSMYTQMLCGLLEREQVLRVGAVFASGLLRAIRFLQLHWRELSDDIESGMLNKKITDPTVKDCMVNILKPNPKLAEFVRMECGKENWEGIITRI WPNTKYLDVIVTGAMAQYIPTLDYYSGGLPKACTMYASSECYFGLNLNPMCKPSEVCYTIMPNMAYFEFLPHEPAGISQDSTPKLVDLADVELGKEYELV ITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQTAVENASQLLREFNTSVVEYTSHADTKTIPGHYVIYWELLVKDSANSPG DEVLNQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSKHFSPALPRWAPERRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.009G092900 [exp]	0	1
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028800 [exp]	12.72	0.9238
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029700 [exp]	15.29	0.9127
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.011G130951 [exp]	15.68	0.8770
					Potri.018G119400 [exp]	15.96	0.9212
AT3G25600			Calcium-binding EF-hand family...		Potri.010G132800 [exp]	16.06	0.8432
					Potri.018G122600 [exp]	16.58	0.9160
AT1G14540			Peroxidase superfamily protein...		Potri.008G022248 [exp]	17.23	0.9106
AT1G14540			Peroxidase superfamily protein...		Potri.008G022700 [exp]	20.19	0.9102
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030000 [exp]	22.27	0.9037
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.012G126100 [exp]	22.44	0.8798	Pt-ATTPPA.3

Compare expression of checked genes

Potri.009G092900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.