Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19510 295 / 3e-87 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G29940 172 / 3e-44 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT3G01460 49 / 2e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G09790 47 / 4e-05 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT4G17710 44 / 0.0007 HD HDG4 homeodomain GLABROUS 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298400 [exp] 1211 / 0 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G075500 [exp] 171 / 7e-44 AT4G29940 466 / 6e-154 pathogenesis related homeodomain protein A (.1.2) Potri.018G142400 [exp] 170 / 1e-43 AT4G29940 461 / 4e-152 pathogenesis related homeodomain protein A (.1.2) Potri.012G018300 [exp] 53 / 5e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 53 / 6e-07 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.017G072460 [exp] 46 / 0.0001 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.002G076900 [exp] 45 / 0.0003 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018741 [exp] 311 / 6e-93 AT3G19510 304 / 4e-92 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024826 [exp] 217 / 5e-59 AT3G19510 224 / 1e-62 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10020011 [exp] 167 / 5e-43 AT4G29940 429 / 7e-141 pathogenesis related homeodomain protein A (.1.2) Lus10015536 [exp] 167 / 7e-43 AT4G29940 440 / 4e-144 pathogenesis related homeodomain protein A (.1.2) Lus10030625 [exp] 49 / 2e-05 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 47 / 7e-05 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.009G093000.5 pacid=42771048 polypeptide=Potri.009G093000.5.p locus=Potri.009G093000 ID=Potri.009G093000.5.v4.1 annot-version=v4.1 ATGTCTGAGGCTGAGAACATGGGTGTTTCTCCATCACAAGTTAGTTCTCAAACTAAAAGTTACTCATGCCCTTCACAAACTAAACTGGAAAATACTCATG GATTTACTGCTGAATACAACTGTGGTGGATATTCGGAAGAGAAACATAAGCTTGAGTCTGAAATCATACAAACTGAAGCCGGAGATAGCGGTACTGCAGT TCTCCAATCTGGTGCTGGGGAAACTGTGGAACCATCTACTGAAGATGTAACAAACAATTCTTTTACTGATTTGGATCCACCTCCCGAAGATGCCAGGGGT GCTACTTTTGATGAAAGTTCAAGACCTATACTAACTGCTATAGATCAGAAACTCGAGCCAGGTGCTAGAAGTGTGAATACTGCGTGTACGCATGGTGAAT CATCAAAAGCAACTGACTCTGGTATTCTACAGGATGAACCTGGAAATACCAATGCTGCATCATCAAGCTGCATTGCTAATGAAACCTCACAAGCATCACT TGAAAATCTAGCCAATAATTCTTGTACTGAAGATGTGGGTCCGCCGTATGGAGATGCAAGCAAGGGTAACCAGATTGATAAAAGTTCATACCCTCAACAA ACTATATCTGGACATACACTTGAGTTACTTTCTGACAGAGCTTGTTGTGAACGATCAGAAGAAAGACAGAAGCCTGGATCTGAACTTTCAGAAAATGAAT CAACGGGAATTGACACTGAATTATATAGTGGCATTGCTATCGAGAATTCAGAGCCGCTTACTCAACTAGTGACCAAGAGTTCTCCTATCAAACATGTAGG CTTGCTTCCTGGTGACAGCATCATCATTCCTGCAAATGAACAAACAAGACCAACTCATGATGATGAGGACAAAGGCCCAGATCATGAACATTTGGAAACA CCATCTAGAGTTGCGATTGGTATTACTAGACGCGGTAGACCTAGAGGTAAGAGTGCTTCAAGATTGTCAAGGAAGATATATATGTTAAGATCTTTGAGAA GTAGTGATAGAGTTCTCCGGTCAAGATCACAAGAGAAACCTAAAGCTCCTGAATCAAGTAATAATTCAGGTAATGTTAATTCCACTGGTGATAAAAAAGG GAAAAGAAGGAAAAAGAGAAGAGGAAAGAATATTGTGGCTGATGAATATTCCAAAATCAGGGCACATCTTAGGTACTTATTGAATCGGATGAGCTATGAG CAAAGCTTGATCACTGCTTATTCTGGGGAAGGCTGGAAAGGACTTAGCCTAGAAAAGTTAAAGCCCGAGAAGGAGTTGCAGCGAGCCACATCTGAAATTA CCAGACGCAAAGTGAAAATAAGGGATTTATTTCAACATATTGATTCTCTGTGCAGCGAAGGAAGGTTCCCATCATCTTTATTTGATTCTGAAGGACAGAT TGACAGTGAGGATATATTCTGTGCAAAATGTGGGTCCAAAGATTTGAATGCTGATAATGATATTATACTATGTGATGGTGCTTGTGACAGAGGATTTCAT CAGTTCTGTTTGATACCACCATTGTTAAGAGAAGACATTCCTCCTGATGATGAGGGCTGGTTATGCCCTGGATGTGATTGCAAAGTTGACTGCATTGGTT TGCTTAACGATTCTCAAGGAACAAATATATCTATCAGTGATAGCTGGGAGAAAGTTTTCCCTGAGGCTGCCGCCACAGCGTCTGGACAAAAACTGGATCA CAACTTTGGACCATCTTCTGATGATTCTGATGATAATGATTATGAACCTGATGGTCCAGATATTGATAAGAAGAGTCAGGAGGAGGAATCGAGCTCTGAC GAATCTGACTTCACTTCTGCATCTGATGAATTCAAGGCTCCCCCGGATGGCAAAGAGTACTTGGGGCTCTCTTCTGATGATTCAGAGGATGATGACTATG ATCCTGATGCTCCAGTTCTTGAGGAGAAGCTGAAGCAGGAAAGTTCAAGTTCTGATTTTACATCAGACTCTGAGGATCTTGCTGCAACTATTAATGGTGA TGGGTTGTCTTTAGAAGATGAATGCCACATGCCTATTGAACCTCGTGGAGTTTCTAATGGGAGGAAATCTAAATTTGATGGAAAGAAGATGCAGTCTTTA AACAGCGAGCTTTTATCCATGCTAGAACCAGATCTGTGCCAAGATGAGTCAGCAACTGTTTCTGGAAAAAGAAATGTTGACAGATTGGACTACAAGAAGC TCTATGATGAAACGTATGGAAACATTTCTACTTCAAGTGATGATGATTACACTGATACTGTTGGGCCAAGGAAGAGGAGGAAAAATACTGGAGATGTTGC TACAGTGACAGCAAACGGAGATGCCTCTGTTACCGAGAATGGAATGAATAGCAAGAATATGAACCAGGAATTAAAGGAGAACAAACGTAATCCTGAGAGA GGAACTTGCCAAAACTCGAGCTTTCAAGAAACAAATGTTTCCCCGGCTAAATCATATGTTGGTGCATCTCTATCTGGTTCTAGTGGTAAAAGCGTTAGGC CCTCTGCTTATAAAAAACTTGGAGAAGCTGTAACTCAGAGACTGTACAGTTACTTCAAGGAAAATCAGTATCCAGACCGAGCTGCAAAAGCAAGCTTGGC AGAAGAGCTAGGAATTACTTTTGAGCAGGTTAACAAGTGGTTTGTGAATGCCCGTTGGAGCTTCAACCATTCATCATCTACAGGTACAAGTAAAGCTGAA AGTGCTTCTGGAAAAGGTAGCTGTGATGGCCAAGTGAGGGATAGTGAATCGAAGAACCGAAAGAGCAATAAACAAAAAACTAACACCCTGAAATCTAGGA GATAA
AA sequence Show only first row Show all	>Potri.009G093000.5 pacid=42771048 polypeptide=Potri.009G093000.5.p locus=Potri.009G093000 ID=Potri.009G093000.5.v4.1 annot-version=v4.1 MSEAENMGVSPSQVSSQTKSYSCPSQTKLENTHGFTAEYNCGGYSEEKHKLESEIIQTEAGDSGTAVLQSGAGETVEPSTEDVTNNSFTDLDPPPEDARG ATFDESSRPILTAIDQKLEPGARSVNTACTHGESSKATDSGILQDEPGNTNAASSSCIANETSQASLENLANNSCTEDVGPPYGDASKGNQIDKSSYPQQ TISGHTLELLSDRACCERSEERQKPGSELSENESTGIDTELYSGIAIENSEPLTQLVTKSSPIKHVGLLPGDSIIIPANEQTRPTHDDEDKGPDHEHLET PSRVAIGITRRGRPRGKSASRLSRKIYMLRSLRSSDRVLRSRSQEKPKAPESSNNSGNVNSTGDKKGKRRKKRRGKNIVADEYSKIRAHLRYLLNRMSYE QSLITAYSGEGWKGLSLEKLKPEKELQRATSEITRRKVKIRDLFQHIDSLCSEGRFPSSLFDSEGQIDSEDIFCAKCGSKDLNADNDIILCDGACDRGFH QFCLIPPLLREDIPPDDEGWLCPGCDCKVDCIGLLNDSQGTNISISDSWEKVFPEAAATASGQKLDHNFGPSSDDSDDNDYEPDGPDIDKKSQEEESSSD ESDFTSASDEFKAPPDGKEYLGLSSDDSEDDDYDPDAPVLEEKLKQESSSSDFTSDSEDLAATINGDGLSLEDECHMPIEPRGVSNGRKSKFDGKKMQSL NSELLSMLEPDLCQDESATVSGKRNVDRLDYKKLYDETYGNISTSSDDDYTDTVGPRKRRKNTGDVATVTANGDASVTENGMNSKNMNQELKENKRNPER GTCQNSSFQETNVSPAKSYVGASLSGSSGKSVRPSAYKKLGEAVTQRLYSYFKENQYPDRAAKASLAEELGITFEQVNKWFVNARWSFNHSSSTGTSKAE SASGKGSCDGQVRDSESKNRKSNKQKTNTLKSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	0	1
AT5G05800			unknown protein		Potri.010G076000 [exp]	2.00	0.8197
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	4.00	0.8276
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.001G298400 [exp]	5.29	0.7930
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	5.47	0.8230
AT1G52620			Pentatricopeptide repeat (PPR)...		Potri.001G139200 [exp]	5.74	0.8279
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.006G015900 [exp]	6.92	0.7946
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	7.41	0.8095	Pt-CIP111.1
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	10.67	0.8070
AT5G43310			COP1-interacting protein-relat...		Potri.008G168300 [exp]	11.48	0.7705
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	12.00	0.7917

Compare expression of checked genes

Potri.009G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.