Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43080 288 / 1e-94 CYCA3;1 Cyclin A3;1 (.1) AT1G47230 282 / 2e-92 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47210 275 / 2e-89 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47220 259 / 4e-84 CYCA3;3 Cyclin A3;3 (.1) AT1G15570 258 / 6e-82 CYCA2;3 CYCLIN A2;3 (.1) AT5G25380 257 / 8e-82 CYCA2;1 cyclin a2;1 (.1) AT5G11300 256 / 3e-81 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G80370 254 / 3e-80 CYCA2;4 Cyclin A2;4 (.1) AT1G44110 244 / 1e-76 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 224 / 4e-69 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021100 [exp] 331 / 1e-111 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.002G121500 [exp] 323 / 3e-108 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.001G177100 [exp] 256 / 8e-81 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.006G247200 [exp] 253 / 2e-79 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.002G080000 [exp] 253 / 3e-79 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.018G034100 [exp] 249 / 4e-78 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.003G058200 [exp] 248 / 8e-78 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.005G181400 [exp] 243 / 9e-76 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.002G010000 [exp] 161 / 5e-45 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018715 [exp] 315 / 2e-104 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10024822 [exp] 311 / 4e-103 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10013886 [exp] 292 / 3e-96 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10029700 [exp] 250 / 4e-79 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10028544 [exp] 246 / 1e-77 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10008103 [exp] 242 / 2e-75 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10026598 [exp] 231 / 6e-74 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10042739 [exp] 239 / 9e-74 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10014199 [exp] 229 / 1e-71 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10012261 [exp] 153 / 2e-41 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G093100.4 pacid=42771976 polypeptide=Potri.009G093100.4.p locus=Potri.009G093100 ID=Potri.009G093100.4.v4.1 annot-version=v4.1 ATGAGCGAGAACGAGAATCACGTGCAATCCACGCGCTCATCATCATCATCATCCAGGAAACGGGCCCCAAAGGCTCACCACCCTCTGCCACCCTCCAAGA AGAAGCGAGTCCCATTGGGTGAACTCACAAACTCTCTCCATATCACCACCAACAACTCGGATTGCAATATCAGCGAGTCTAAGTATGCAGCCAAAGCGGA TGACTTGCCACCACCAAGTACTGAGTCAAGTCGAGACTCGGATTTCGAGACCACCCCGAAGATTGAATGTGAAGTGAAGGAGGGGAATCATAACGATTTA GAAAAGTTTCCGAGCGCTGAGTCCATTAAAAAATCAGGGTTAAGGAGGTGTTCTTACACTTCCTCTATCTATCGATATCTTCACTCCTTGGAGATGGAGG GCAATAGAAGGTGCTTGTCAAATTACATGCGGGAGGTGCAGAATGATGTATCAGGCAATATGCGGGAAATTCTAGTGGATTGGTTAGTGGAAGTTGCAGA AGAATACAGACTTGTCTCAGACACCCTTTATCTCACTGTATCGTATATCGATAGGTTTCTATCTTCACAGGCTTTGAGTAGGAACAATCTACAGCTTCTT GGTGTTTCTTGCATGCTTATTGCCTCGAAGTATGAAGAGATTAGTCCTCCACATGTCGAGAGCTTTTGCCACATAACAGACAACACTTACACCAAGGATC AGGTACTTGATATGGAGAAACAAGTACTTAAATCCTTGAACTATGAAATGGGTGCTCCTACAACAATAAATTTTCTCAGAATCTTGCTGAAAGCTGCTCA AGAGAATTGCGAATCTTCTGATTTGCAATTCGAGCTCTTGAGTTGTTATCTGGCGGAGCTAAGTTTGTTAGAATATGGGTGCATGCGCTTCTTACCATCA ATGATTGCTGCATCAGCTGTTTTCCTTTCAAGTTTCACGATCCAGCCACAGATGCATCCTTGGAGTATGGCATTGCAGCGTCATTCAGGTTACAGACCAT CTGACCTAAAGGAATGTGTTCTTGCTATTCATGACATTCAATTAAATAGAAAAGGAAGCTCTTCGCGAGCAGTGAGAGATAAATACACACAGAACAAGTT TAAGCATGTGGCAACTTTATCTCCTCCCTCAGAAGTTCCTGGGCGTTACTTTGCGGCCATCAATGAGTTATGCTCTGTGAGATTCTCAAGAATGCGTTGA
AA sequence Show only first row Show all	>Potri.009G093100.4 pacid=42771976 polypeptide=Potri.009G093100.4.p locus=Potri.009G093100 ID=Potri.009G093100.4.v4.1 annot-version=v4.1 MSENENHVQSTRSSSSSSRKRAPKAHHPLPPSKKKRVPLGELTNSLHITTNNSDCNISESKYAAKADDLPPPSTESSRDSDFETTPKIECEVKEGNHNDL EKFPSAESIKKSGLRRCSYTSSIYRYLHSLEMEGNRRCLSNYMREVQNDVSGNMREILVDWLVEVAEEYRLVSDTLYLTVSYIDRFLSSQALSRNNLQLL GVSCMLIASKYEEISPPHVESFCHITDNTYTKDQVLDMEKQVLKSLNYEMGAPTTINFLRILLKAAQENCESSDLQFELLSCYLAELSLLEYGCMRFLPS MIAASAVFLSSFTIQPQMHPWSMALQRHSGYRPSDLKECVLAIHDIQLNRKGSSSRAVRDKYTQNKFKHVATLSPPSEVPGRYFAAINELCSVRFSRMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.009G093100 [exp]	0	1
AT3G55550			Concanavalin A-like lectin pro...		Potri.006G144850 [exp]	1.41	0.7732
AT3G23940			dehydratase family (.1.2)		Potri.001G051700 [exp]	8.94	0.6688
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.005G213100 [exp]	17.66	0.6446	HMT5,SMTA.2
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	21.56	0.6307
AT3G01600	NAC	ANAC044	NAC domain containing protein ...		Potri.001G343800 [exp]	21.90	0.6519
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.003G189200 [exp]	30.33	0.6176
AT5G09270			unknown protein		Potri.005G066900 [exp]	30.44	0.6543
AT5G23300		PYRD	pyrimidine d (.1)		Potri.007G074101 [exp]	30.98	0.6459
AT3G14890			phosphoesterase (.1.2)		Potri.001G390500 [exp]	32.17	0.5729
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	35.09	0.6274

Compare expression of checked genes

Potri.009G093100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.