Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 1030 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298900 [exp] 1336 / 0 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093900 [exp] 1253 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G299000 [exp] 1234 / 0 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 57 / 4e-10 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026594 [exp] 1158 / 0 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 1066 / 0 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10029689 [exp] 1052 / 0 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013884 [exp] 994 / 0 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 574 / 0 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 164 / 3e-45 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF14498 [poplar] [flax] Glyco_hyd_65N_2 Glycosyl hydrolase family 65, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G093500.1 pacid=42772732 polypeptide=Potri.009G093500.1.p locus=Potri.009G093500 ID=Potri.009G093500.1.v4.1 annot-version=v4.1 ATGGAAGATGGAAGCTGGGTTTTAGTTACACGACCCACTGATAGAGACATGTGGAATCCAACCTCAACTTACTTGGAGGACTCCAAACCCTTAAAGATCA CTTCTACTGGGCCCGCCAAGTACTGGACGGATGCAATTCCGATCGGTAATGGCCGTCTCGGTGCCATGGTGTGGGGTGGCGTCTCATCAGAACTTATCCA GCTTAACGAGGACACACTTTGGACAGGGACTCCGATTGATTATACTAACCCTGATGCACCAGAGGCATTAGCTGAGGTTAGAAATCTTGTGGACAGTGGT GAATTTGCAGAAGCTAGTGATGCAGCAGCCAAGTTGTCTGGAACTAATGCCAATGTTTACCAACTACTTGGTGATATCAAGCTAGAATTCGATGGTTACC TTATGTGTGCTGAAGAAACATATTATAGAGAGCTAGACTTAGATACTGCAACAGCAAGAGTGAAGTATTCTGTGGGTGATGTAGAATTCACGAGGGAGCA CTTTGCATCTTATCCAGATCAAGTGATTGTGACAAAGATTGCTGGAAGCAAAGAAGGGTCTGTATCCTTTACTGTATCTTTAGACAGCAAGTTGGATCAT CATTGTTACATAACAGACGAAAGCCAAATTGTAATGGAAGGAAGATGCCCTGGAAAAAGGATCCCGCCAAAAGTAAAGGCTAATGATGATCCAAAAGGAA TTCTGTTTGCTGCTGTTCTTGGTTTACAGATTAGTGACGGTGCAGGTCTGATGAGTGTTTTGGATGATGGGAGGTTGAAGGTTGAAGGTGCAAATTGGGT TGTGTTGCATATGGTGGCTTCATCTTCGTTTGAAGGGCCATTCACAAAGCCCTCAGAATCAGAGAAAGATCCTGCTTCTGTGTCTCTCAGTGCATTGAAA TCAATAAAAAACCAGTCATATTCTGAGCTTTATTCACGTCATTTAGATGACTATCAGAACCTTTTTCACCGTGTTTCGTTGCAGCTATGCAAGGGCTCTG ATAGAAATATAGGAGATAGATCTTTGGAGATCAAGAATCTTATGCCTTCTGGAAAAAGATGTGTTGAAGGAAACAAAGATGTAGTTCCAACAGTAGACAG GATAAGATCTTTTCAATCTGATGAAGATCCTTCGTTGGTGGAACTTCTATTCCAGTTTGGTCGATATTTGCTTATTTCTAGTTCCCGCCCTGGAACTCAG GTGGCTAATCTTCAGGGGATATGGAACAAGGATCTTGAGCCAAAATGGGATTCTGCTCCTCACTTAAACATCAATCTTGAAATGAACTATTGGCCTTCCC TGCCTTGCAACCTTAGTGAGTGCCAGGAGCCCTTGTTTGAATTTATCAAATCTCTATCAATCAATGGATGTAAAACTGCACAAGTAAACTACAAAACAAG TGGTTGGGTGGTGCATCATAAGTCTGACATATGGGCGAAACCATCAGCAGATAAGGGAGAGGTTGTGTGGGCAATATGGCCTATGGGCGGGGCATGGCTT TGCACTCATTTATGGGAGCACTACAGTTATACAATGGATGAAGATTTTCTTAGAAATAAGGCATACCCTCTGTTGGAAGGATGTGCATCATTTTTGTTGG ACTGGTTGATTGAAGGGCATGGAGGATATCTAGAAACCAACCCGTCCACTTCTCCTGAACATATGTTTATTGCCCCAGATGGTAAGTCTGCTTCTGTGAG CTATTCATCAACTATGGATATGGCACTCATCAAAGAAGTATTTTCTGCTATTATTTCTGCTTCTGAGGTTTTGGGCAGAAATGAGGATGCTTTTGTTCAG AAAGTGCACAAGGCTCAACCAAGGCTTTATCCAACAAAAATTGATGAAGAAGGCTCTATTATGGAATGGGCACAAGACTTTAAGGACCCTGATGTGCATC ATCGACACCTTTCACATCTGTTTGGCCTGTTTCCAGGACACTCAATAACCATCGACAAAAATCCAGAGCTTTGTGAAGCAGCAGAAAATTCTCTCTACAA ACGAGGAGAGGATGGGCCAGGATGGTCGACCACATGGAAAATTGCTCTATGGGCACATCTGCACAACAGTGAGCATTCTTATAGGATGGTTAAGCAATTA ATTAAGTTGGTGGATCCAGATCACGAGGTAGCGTTTGAAGGTGGACTGTACAGTAATTTGTTTGCAGCACATCCTCCTTTTCAAATTGATGCCAATTTTG GATTCACAGCGGGGGTTTCAGAAATGCTTGTCCAGAGTAGCATAAAAGATCTGTACTTGCTCCCTGCTCTCCCTCGAGATAAATGGGCAAATGGATGTGT TAAAGGATTAAAGGCACGCGGGGGGTTGACAGTCAGCATATGCTGGAAAGAAGGAGATCTTCATGAAGTTGGTGTTTGGCTGAAGGATGGAAGCTCCTCC CTCCAAAGAATACATTATGGAGGAACTACAGTCACAGTAAACTTATCATGTAGAAAGATTTACACATTCAATACACAGTTAGAGTGTGTAAAGACTCTCT CCCTCTCATGA
AA sequence Show only first row Show all	>Potri.009G093500.1 pacid=42772732 polypeptide=Potri.009G093500.1.p locus=Potri.009G093500 ID=Potri.009G093500.1.v4.1 annot-version=v4.1 MEDGSWVLVTRPTDRDMWNPTSTYLEDSKPLKITSTGPAKYWTDAIPIGNGRLGAMVWGGVSSELIQLNEDTLWTGTPIDYTNPDAPEALAEVRNLVDSG EFAEASDAAAKLSGTNANVYQLLGDIKLEFDGYLMCAEETYYRELDLDTATARVKYSVGDVEFTREHFASYPDQVIVTKIAGSKEGSVSFTVSLDSKLDH HCYITDESQIVMEGRCPGKRIPPKVKANDDPKGILFAAVLGLQISDGAGLMSVLDDGRLKVEGANWVVLHMVASSSFEGPFTKPSESEKDPASVSLSALK SIKNQSYSELYSRHLDDYQNLFHRVSLQLCKGSDRNIGDRSLEIKNLMPSGKRCVEGNKDVVPTVDRIRSFQSDEDPSLVELLFQFGRYLLISSSRPGTQ VANLQGIWNKDLEPKWDSAPHLNINLEMNYWPSLPCNLSECQEPLFEFIKSLSINGCKTAQVNYKTSGWVVHHKSDIWAKPSADKGEVVWAIWPMGGAWL CTHLWEHYSYTMDEDFLRNKAYPLLEGCASFLLDWLIEGHGGYLETNPSTSPEHMFIAPDGKSASVSYSSTMDMALIKEVFSAIISASEVLGRNEDAFVQ KVHKAQPRLYPTKIDEEGSIMEWAQDFKDPDVHHRHLSHLFGLFPGHSITIDKNPELCEAAENSLYKRGEDGPGWSTTWKIALWAHLHNSEHSYRMVKQL IKLVDPDHEVAFEGGLYSNLFAAHPPFQIDANFGFTAGVSEMLVQSSIKDLYLLPALPRDKWANGCVKGLKARGGLTVSICWKEGDLHEVGVWLKDGSSS LQRIHYGGTTVTVNLSCRKIYTFNTQLECVKTLSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093500 [exp]	0	1
AT4G00290			Mechanosensitive ion channel p...		Potri.002G162100 [exp]	1.41	0.7831
AT2G21120			Protein of unknown function (D...		Potri.019G001100 [exp]	4.58	0.7781
AT5G43310			COP1-interacting protein-relat...		Potri.008G168300 [exp]	7.93	0.7486
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	9.48	0.7828
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.011G145800 [exp]	15.81	0.7590
AT1G02260			Divalent ion symporter (.1)		Potri.015G146900 [exp]	16.24	0.7219
AT4G40050			Protein of unknown function (D...		Potri.005G072200 [exp]	17.88	0.7109
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	18.00	0.7656
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Potri.009G156400 [exp]	19.74	0.7575
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	35.55	0.7494	Pt-TAN1.2

Compare expression of checked genes

Potri.009G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.