Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42860 44 / 2e-05 zinc knuckle (CCHC-type) family protein (.1) AT5G13920 43 / 7e-05 GRF zinc finger / Zinc knuckle protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G112676 [exp] 50 / 2e-07 AT5G13920 116 / 7e-28 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125604 [exp] 50 / 3e-07 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125504 [exp] 50 / 3e-07 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1) Potri.001G318100 [exp] 42 / 0.0001 AT3G42860 211 / 8e-66 zinc knuckle (CCHC-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025368 [exp] 120 / 6e-35 AT3G42860 44 / 1e-05 zinc knuckle (CCHC-type) family protein (.1) Lus10020975 [exp] 120 / 1e-34 AT5G13920 42 / 5e-05 GRF zinc finger / Zinc knuckle protein (.1) Lus10013881 [exp] 106 / 3e-29 ND 37 / 0.003 Lus10011629 [exp] 50 / 7e-08 ND 39 / 6e-04 Lus10014888 [exp] 47 / 7e-07 ND 39 / 7e-04 Lus10022142 [exp] 45 / 2e-06 ND / Lus10004093 [exp] 45 / 3e-06 ND 39 / 6e-04 Lus10009212 [exp] 43 / 2e-05 ND 37 / 0.001 Lus10030560 [exp] 44 / 3e-05 AT3G42860 258 / 1e-82 zinc knuckle (CCHC-type) family protein (.1) Lus10032472 [exp] 42 / 3e-05 ND 35 / 0.004
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF06839 [poplar] [flax] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Potri.009G094001.1 pacid=42771811 polypeptide=Potri.009G094001.1.p locus=Potri.009G094001 ID=Potri.009G094001.1.v4.1 annot-version=v4.1 ATGAGCAGCCTCGAGGATTCACCAATGAGTGACTCTGGGGGTTCTGAAATGAGTGATTCTGAGACGAGTGGTTCTGAAGATTTCGAGTTGAGTACCCCAG AAGATTTTGAGTCCAGTGCCCCTGAAGATGCTTGCCTGGAATGCTATTGTGGACGTCTCGCAAAACTGCGAGTATCAAATACTACCAAGAATCCATCTCG GTTATTCTACAATTGCCCCATGAGAATCGATAGTCAATGTGGATATTTCGAGTGGGCTGATGAGCTAGGTCAAGCTAAACATACCAAGGAGCTAAATAAG ATTCGCCTCCGGTGCACTCAACTGCAAGAAAGGTTGGAGGACATTCAGCAGCAACGTGATAATGATAGGATTGTCTGGCAGAGGGAAAGATCCGAGCTAA CGACAAGATTATTTACTGTCCAAGCTGAGCTTGATGATATCAAGAAGAAAATTAAAATGGTGAACGAGTCAGAACTTATGCCCCCTCTTGATAAATTATC CAGTACAGTTGCAGATGATGAGAGAGATGATGCAAAAGTCATATATGCTACATGA
AA sequence Show only first row Show all	>Potri.009G094001.1 pacid=42771811 polypeptide=Potri.009G094001.1.p locus=Potri.009G094001 ID=Potri.009G094001.1.v4.1 annot-version=v4.1 MSSLEDSPMSDSGGSEMSDSETSGSEDFELSTPEDFESSAPEDACLECYCGRLAKLRVSNTTKNPSRLFYNCPMRIDSQCGYFEWADELGQAKHTKELNK IRLRCTQLQERLEDIQQQRDNDRIVWQRERSELTTRLFTVQAELDDIKKKIKMVNESELMPPLDKLSSTVADDERDDAKVIYAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42860			zinc knuckle (CCHC-type) famil...		Potri.009G094001 [exp]	0	1
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Potri.013G069900 [exp]	1.00	0.6417
AT3G48880			RNI-like superfamily protein (...		Potri.012G137700 [exp]	3.87	0.6137
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Potri.012G063400 [exp]	8.36	0.6415
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007300 [exp]	28.77	0.5747
					Potri.001G186075 [exp]	59.74	0.4756
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Potri.004G013200 [exp]	69.71	0.5323	Pt-ATGLX1.1
AT2G26210			Ankyrin repeat family protein ...		Potri.018G047000 [exp]	70.84	0.5304
AT5G28910			unknown protein		Potri.013G047600 [exp]	97.14	0.4657
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.015G007400 [exp]	151.31	0.4696

Compare expression of checked genes

Potri.009G094001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.