Plant FIBer expression Database

Potri.009G094100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15020 592 / 0 unknown protein
AT5G64190 183 / 1e-51 unknown protein
AT2G40390 150 / 2e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G183100
[exp]
192 / 7e-55 AT2G40390 590 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013880
[exp]
581 / 0 AT2G15020 516 / 1e-179 unknown protein
Lus10026592
[exp]
576 / 0 AT2G15020 518 / 2e-180 unknown protein
Lus10010225
[exp]
158 / 4e-42 AT2G40390 555 / 0.0 unknown protein
Lus10009844
[exp]
150 / 2e-39 AT2G40390 517 / 0.0 unknown protein
Lus10017423
[exp]
58 / 4e-10 AT2G40390 119 / 7e-33 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G094100.1 pacid=42772791 polypeptide=Potri.009G094100.1.p locus=Potri.009G094100 ID=Potri.009G094100.1.v4.1 annot-version=v4.1
ATGATGGACATTTGGTCATGGATATGTGAGATACCTAACTCGGACGGGTGGGACGAGTCAGACTCAGCACTCATATTTGAGCTAGCGAGTTCGAAATCGA
GTCAGGACGGGCCAACTCGAGCTATTCAACTCAAAGCTGAGAGAACTTCCGGGTCAAACTCGGAAGCGTTGGTGACTTTCACTATATGTTTACAGGGGTT
TCATCCTTTTGATGCTCCAAAGACTCTCTGGGTCTCTGACACCTGCCCTCTCAACTCTGAAAAACCCTTCCTCCCTCTTGTACTCCAGCTCCTCCAAGAA
ATCATAGTCCGTTCACCCACGGCGCACAATAGCACTTGCCCACGTTCCCAACTACAAAAGCTAAAACCCGACCCAGTATCTTGGATTATGGACTCTCACA
CACCCGAGTCCTTTTCAAGCTTCTTCAGTTTAGTTTTTATCACGCGCTTGTTTTGGTTGTGTGCATTTGACGCACCCACCGAAGCTGGGTCTCTGTGCTT
TGAGTCGGTATTGGGTCCTCACCTGGAAACATTATCGTGTAAACAAGCACCTGTGCTGCGAACGTTTTTACTTACAGTGGGGGTGGATGCTGAGCTATGT
TTTATGCGCGCAGTGGGTTACATGTTAGCAAAATGGCTCATTTTAAGGGAAGTAGGAGTTGGGTTACAAACATTAGCACCCTTGGCAAGCCAGCAAGTTG
GGTTATCTTATGCAACGGAGGCTTATGGGTTATGGGTCTTAAAGGGCTACGCTCCAATTTTAGCAATGAATCCTACATGCCCTAGAAACAATAAATTTTG
TATCCTTGAAGCTAAGGATACTGTGTTGAAATATGCCTTGGCACACCACCAGTTGGAGGCAGTTATCCAGTTGGAATATGCAGTTCGATTCTATGATGGG
TATATTCAGGTCAATGCACGTGTCAACAATTTACGTTTCCACGTGGTGAGATTAGGGTTCAAGAAAAATGAAGGTGTGGATTATGATGACGAGAGGCATT
TTGTGTCACGGGCTCGAGTCTGGGTTGGGCCAGAAATTGGAGCGACTTATGTGGGTGGATTGTGTTTGGGTCGGTCCACATATAACGGGGAGAAGGAGGT
GGAAATTCAAAGGATTTTGAAAGGTAGTTATGGTGAAGCAAAGGTCCCGCAGGTGAAGACGAGATCAGGGATGGCAACAAAGACAAGGATGAAAAGCTGG
AGGTGTGACCAAGATGTTGAAGGGAATGCTGTTGTTTTTGATGCTGTCTTATATGACAACATGACGGGTCAAGAAGTTGCCACACGGAAACCAATTGGTG
ATGGTAACAGCGTTGGTGTTGGTGGCAGGAATGGCAAAAGCTTTGGGACTAGATGCAATGGACCAAACAGACCATTTACAAAAACAGGCGGGGTGGTTTT
TGCAGGAGACGAGTATGGGGAGGGAGTAGAGTGGAGACTGAGCAAGGAAACGGAAGGCAGTGTCCTGAAGTGGAGGCTAGGAGGGCAAGTTTGGGTGAGT
TATTGCCCTAGCGAGGTGAAGAGTTCACATTTTGAGACGAGGAGTGTAGAGTGGTGCGATGAGGTTGATTTGCCCATAATTCCTGCTAAATAG
AA sequence
>Potri.009G094100.1 pacid=42772791 polypeptide=Potri.009G094100.1.p locus=Potri.009G094100 ID=Potri.009G094100.1.v4.1 annot-version=v4.1
MMDIWSWICEIPNSDGWDESDSALIFELASSKSSQDGPTRAIQLKAERTSGSNSEALVTFTICLQGFHPFDAPKTLWVSDTCPLNSEKPFLPLVLQLLQE
IIVRSPTAHNSTCPRSQLQKLKPDPVSWIMDSHTPESFSSFFSLVFITRLFWLCAFDAPTEAGSLCFESVLGPHLETLSCKQAPVLRTFLLTVGVDAELC
FMRAVGYMLAKWLILREVGVGLQTLAPLASQQVGLSYATEAYGLWVLKGYAPILAMNPTCPRNNKFCILEAKDTVLKYALAHHQLEAVIQLEYAVRFYDG
YIQVNARVNNLRFHVVRLGFKKNEGVDYDDERHFVSRARVWVGPEIGATYVGGLCLGRSTYNGEKEVEIQRILKGSYGEAKVPQVKTRSGMATKTRMKSW
RCDQDVEGNAVVFDAVLYDNMTGQEVATRKPIGDGNSVGVGGRNGKSFGTRCNGPNRPFTKTGGVVFAGDEYGEGVEWRLSKETEGSVLKWRLGGQVWVS
YCPSEVKSSHFETRSVEWCDEVDLPIIPAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G15020 unknown protein Potri.009G094100
[exp]
0 1
AT1G64500 Glutaredoxin family protein (.... Potri.001G088900
[exp]
1.41 0.9897
AT5G16340 AMP-dependent synthetase and l... Potri.013G096200
[exp]
4.00 0.9876
AT3G18950 Transducin/WD40 repeat-like su... Potri.004G148400
[exp]
4.47 0.9827
AT2G27180 unknown protein Potri.009G151600
[exp]
4.58 0.9555
AT3G56290 unknown protein Potri.019G056400
[exp]
4.89 0.9789
AT5G12180 CPK17 calcium-dependent protein kina... Potri.009G069200
[exp]
5.65 0.9633 CPK17.1
AT5G16970 AT-AER alkenal reductase (.1) Potri.007G143700
[exp]
8.48 0.9717
AT5G20150 ATSPX1 ARABIDOPSIS THALIANA SPX DOMA... Potri.018G131500
[exp]
8.83 0.9345
AT4G21990 3-Apr, PRH-26, ... PAPS REDUCTASE HOMOLOG 26, APS... Potri.004G011525
[exp]
9.16 0.9652
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G172100
[exp]
9.16 0.9757

Potri.009G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.