Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44750 1071 / 0 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) AT5G44740 127 / 8e-30 POLH Y-family DNA polymerase H (.1.2) AT1G49980 126 / 2e-29 DNA/RNA polymerases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293600 [exp] 130 / 5e-31 AT1G49980 826 / 0.0 DNA/RNA polymerases superfamily protein (.1) Potri.003G152600 [exp] 127 / 6e-30 AT5G44740 775 / 0.0 Y-family DNA polymerase H (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013870 [exp] 1215 / 0 AT5G44750 1025 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Lus10020986 [exp] 131 / 4e-31 AT1G49980 768 / 0.0 DNA/RNA polymerases superfamily protein (.1) Lus10036237 [exp] 118 / 7e-27 AT5G44740 765 / 0.0 Y-family DNA polymerase H (.1.2) Lus10041155 [exp] 58 / 1e-09 ND 38 / 0.001
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00817 [poplar] [flax] IMS impB/mucB/samB family CL0198 [poplar] [flax] HHH PF11798 [poplar] [flax] IMS_HHH IMS family HHH motif CL0198 [poplar] [flax] PF11799 [poplar] [flax] IMS_C impB/mucB/samB family C-terminal domain CL0459 [poplar] [flax] BRCT-like PF16759 [poplar] [flax] LIG3_BRCT DNA ligase 3 BRCT domain
Representative CDS sequence Show only first row Show all	>Potri.009G094400.1 pacid=42771724 polypeptide=Potri.009G094400.1.p locus=Potri.009G094400 ID=Potri.009G094400.1.v4.1 annot-version=v4.1 ATGAGTTTTGATTCTTCGCGATCCTCCTCTGCCAATTCAAGTCGAAAATCAAAGAGAGGCTTGAATAATTCGAATTCTTCAAATAATAAAAATAGCAAGC AAAAAACCCTCGGCATGGGTCGGGGTGCCAACTCTCTCTCCTCCTCTCGCCCATCCTTTCGCAACTCTCCTTTCTCCAATTTCGGCAGTTATATGGTAGA GAAGAATAGGAAGCTTCAACACCAATTTGAAGCAGAGGCTTCCACTTCTTCCCATCCTGGTTCGAGTTCCGGGAAGCTGATTTTTCAAGGAGTCTCTATT TTTATTGATGGTTTCACAATTCCTTCGAACCAGGAACTGCGAGCTTACATGTTGAAGTATGGTGGGCGATTTGCGAATTACTTTTCTAGGCATCAAGTTA CGCATATAATCTGTAGCAGTCTTCCCGATAGTAAAATCAAGAACCTGAGGTCATTTAGTGGTGGGCTCCCAGTGGTCAAACCTGAATGGATTTTGGATTC CATTGTTGCTAACAAACTTTTGAATTGGTTTCCTTACCAGCTCAACCAGCTTGCTAATAACCAACCAAAATTATCAGCCTTCTTTACCCTGAAAAGTAAC CCAGTCCCGGAGAATGTTTTGACCGATGAAGTTTGTCAAGTGAACCTGGATCCAATTTTGAAGGGTGGCACCACAAAGGATGTGTATATTTCCGAAGTGG ATGAACCCGTGAGATTTGCCGAGCAAGCCGGCGAACTACTTGATGATCCTAATCATCAACTCGAGGAGCTAAATGGTAGTAGTGGAAAATCTGCAGAAGT AAAGATGGCAGAATTTGGTAGTAGTGATGCAGAATATGGAAACAGTGTAAACAGCAAGCATCAATCTGGTCCAGATCTATTTTCTGCTTCAGTTAGTGGC TATTGCTTACACAATCAACGTTCGGATGGATCACTGAGTTCAGAACCTAGTGGGCCTTCAAATCGACGTCATTCAACTCTTGGGGATCCCAATTTTGTGG AGAATTACTTTAAGAGTTCAAGGCTGCACTTCATAGGAACCTGGAGAAGTCGGTACCGAAAGCGTTTTCCTAGCTCATCAAGTGAATTTAAGTGCAGAAG CTCAGATCTCAACACCTCTGATAATTCTAACAAGTCTACTATTATCCATGTTGACATGGACTGCTTTTTTGTTTCTGTAGTCATCCGGAATCATCCAGAG TTACATGATAAGCCTGTAGCAGTATGCCATTCTGACAACCCAAAAGGAACAGCTGAAATTTCATCGGCAAACTACCCTGCCCGAAACTATGGAGTTAAGG CTGGGATTTTCGTTAGAGATGCCAAAGCCCTTTGTCCGCAACTAGTCATTTTCCCTTACAATTTCAAAGCTTATGAAGAAGTAGCTGATCAGCTTTACAA CATCTTGCATAAGCACTGCCACAAAGTGCAGGCCATAAGCTGTGATGAAGCATTTTTAGACATCACGGAAAAAGATATGGGAGATCCTGAGCTTTTAGCT TCAACAATAAGGAAAGAGATTTTTGACACAACAGGATGCACTGCAAGTGCTGGGATAGCTGGGAATATGCTCATGGCTCGACTTGCCACTAGAAGTGCTA AACCCAATGGTCAATGCTATATCCCTTCAGTAAGTGTGGATGAGTATCTACACAAACTTCCAATTAAGGCACTTCCAGGAATAGGGCACGTTTTGGAGGA GAAGTTGAAGAAGCAAAATGTTTGGACTTGTGGACAGTTACGCCTGATTTCCAAGGAATCTCTTCAAAAGGATTTTGGACTGAAAACTGGAGAAATGTTG TGGAACTATAGTAGAGGAGTTGATAATAGACTGGTTGGTAACATTCAGGAAAGCAAGACTATAGGTGCTGAAGTCAACTGGGGTGTCAGGTTCAAGGATC TGCAAGATAGTCAATGTTTCCTATTAAATCTTTGCAAGGAGGTTTCTTTCCGTTTGCAAGGATGTAGAGTGCAAGGGCGCACATTTACCCTTAAGATAAA GAAGAGAAGAAAAGATGCCGGTGAACCTGCTAAATATATGGGCTGCGGGGACTGTGAGAATCTGAGCCACTCCATGACAGTTCCTATTGCTATTGATGAT GTTGAAGCTCTTCAAAGGATAACAAAGCAGCTCTTTGGGTCTTTCTGCTTGGATGTCAAGGACATTCGGGGTGTTGGCTTGCAAGTTTCCAAGCTTGAAA ATGCAGACCCTTCTAAACAAGTGCTTGAAAGAAACTCTTTGAGGTCATGGCTCACCTCTTCCTCAGCAACTACTGAAAAAGGGTGTAGCATCAACAGTAT GGACAAAGAGAGGGCTAGGATAGATTCTGAGGTGAAGAACATGATTGGAACTTCAGGTCAATTATTTCCTGACCAGACTGGGTTTTCTGCTCAAGTGGAC ACCAATTCATCAAGTGGTATTTCAGCACCACCACCTTTATCTCATCTTGATATGGGAGTTGTCAAGAGTCTTCCAGCAGAACTTTTTTCTGAGTTAAATG AAATTTATGGAGGGAAGTTAACAGATTTCATTGCTAAAAGCAGTGTTGCAAGTGAAAACATCAACAGTTATCCTAGCACCCCTTCAGCTGAAGGGCAAGA GCTTGCAGTTGACGGTGGTGAGGGACCTCTTGCATCTAATATGATTCCCCTTGACTTTGTAATGGTGGAAAATAGGGCAAAACAGCATATGATTGAGGAA GCACAAGCAGCACCTTCTGGGGCTGGATTGCAGAATGAGGCCATTTCCTCTGTAAGCCCTAACAACACTGATTTAATGCCTTTATCTCTAAGTCAAGTGG ATGTATCAGTGTTACAACAATTGCCAGAAGAATTGAGAGGTGACATACTTGGACAGCTTCCTGCGCACAGAAAACAAGAGTTGACTTCAAATGCTGGATC ACACCCTCTTTCAGAAAATCCTGAGGGAACTTTGATTATTAATATCACTGAGAATCAATCAAATTCCATTGCCTCTGTTTTGAATACTAATCTTTGGATT GGGAGCCCCCCACAGTGGGTTGATAAGTTCACAGTCAGCAGCTGCTTGATATTAAAGACTTTGGCAGAGTTGTATTACAAATTGGGATCAACTGGAAGTC TATCTCCTATACTGCAACGCATAATTTCTGAATGTCTATATCCTTTGGATGAAAATGGTGATGCTTGTGGTGAGGAAGCTACATATGATTTGTGTGAGCT TTTCAAGCAATATGTTAAACTAAAGACGGAGCTAGACCTCGAAGAAATTTATGTTTGTTTCTGTCTTCTTAGAAGGTTGTCGACCAAGTCAAAATTCCTC CTACAAGTATACAATATCGTCTTTCCTTACCTTCAGGCATCTGTTGGAGAAAATTATGGAGGAGGTTTGCATATTTAA
AA sequence Show only first row Show all	>Potri.009G094400.1 pacid=42771724 polypeptide=Potri.009G094400.1.p locus=Potri.009G094400 ID=Potri.009G094400.1.v4.1 annot-version=v4.1 MSFDSSRSSSANSSRKSKRGLNNSNSSNNKNSKQKTLGMGRGANSLSSSRPSFRNSPFSNFGSYMVEKNRKLQHQFEAEASTSSHPGSSSGKLIFQGVSI FIDGFTIPSNQELRAYMLKYGGRFANYFSRHQVTHIICSSLPDSKIKNLRSFSGGLPVVKPEWILDSIVANKLLNWFPYQLNQLANNQPKLSAFFTLKSN PVPENVLTDEVCQVNLDPILKGGTTKDVYISEVDEPVRFAEQAGELLDDPNHQLEELNGSSGKSAEVKMAEFGSSDAEYGNSVNSKHQSGPDLFSASVSG YCLHNQRSDGSLSSEPSGPSNRRHSTLGDPNFVENYFKSSRLHFIGTWRSRYRKRFPSSSSEFKCRSSDLNTSDNSNKSTIIHVDMDCFFVSVVIRNHPE LHDKPVAVCHSDNPKGTAEISSANYPARNYGVKAGIFVRDAKALCPQLVIFPYNFKAYEEVADQLYNILHKHCHKVQAISCDEAFLDITEKDMGDPELLA STIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHKLPIKALPGIGHVLEEKLKKQNVWTCGQLRLISKESLQKDFGLKTGEML WNYSRGVDNRLVGNIQESKTIGAEVNWGVRFKDLQDSQCFLLNLCKEVSFRLQGCRVQGRTFTLKIKKRRKDAGEPAKYMGCGDCENLSHSMTVPIAIDD VEALQRITKQLFGSFCLDVKDIRGVGLQVSKLENADPSKQVLERNSLRSWLTSSSATTEKGCSINSMDKERARIDSEVKNMIGTSGQLFPDQTGFSAQVD TNSSSGISAPPPLSHLDMGVVKSLPAELFSELNEIYGGKLTDFIAKSSVASENINSYPSTPSAEGQELAVDGGEGPLASNMIPLDFVMVENRAKQHMIEE AQAAPSGAGLQNEAISSVSPNNTDLMPLSLSQVDVSVLQQLPEELRGDILGQLPAHRKQELTSNAGSHPLSENPEGTLIINITENQSNSIASVLNTNLWI GSPPQWVDKFTVSSCLILKTLAELYYKLGSTGSLSPILQRIISECLYPLDENGDACGEEATYDLCELFKQYVKLKTELDLEEIYVCFCLLRRLSTKSKFL LQVYNIVFPYLQASVGENYGGGLHI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	0	1
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	1.00	0.9232
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.019G018700 [exp]	1.41	0.9150
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	3.46	0.9041
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	3.46	0.8936
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	3.74	0.8917
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.002G241800 [exp]	4.35	0.8748
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	4.79	0.8721
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	4.89	0.8839
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	5.91	0.8965
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	6.24	0.8833	CNGC.1

Compare expression of checked genes

Potri.009G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.