Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 268 / 2e-91 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 71 / 5e-16 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 397 / 1e-142 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 364 / 2e-129 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 334 / 2e-117 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 276 / 2e-94 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 50 / 4e-07 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019806 [exp] 293 / 4e-101 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 253 / 2e-85 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 239 / 5e-80 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 237 / 4e-79 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10014107 [exp] 233 / 7e-77 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 223 / 1e-73 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 223 / 2e-73 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 222 / 4e-73 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 212 / 3e-69 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10013866 [exp] 206 / 6e-67 AT2G15220 202 / 8e-66 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF04450 [poplar] [flax] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Potri.009G094600.1 pacid=42771574 polypeptide=Potri.009G094600.1.p locus=Potri.009G094600 ID=Potri.009G094600.1.v4.1 annot-version=v4.1 ATGTTTCGCCATGTTTATGTCCTCTCTTTGCTAGTACTCCTAGCAATCAACACCGTCTCAGCAGTGGACTACACTGTCACCAACAGAGCTACTGCAACTG CTGGTGGAGCCCGATTCATCACGGACATCGGGGTCGATTACAGCAAGCAAACTCTAGCATCTGCTACAGATTTCATATGGGAGACCTTCCAGCAAAGTAA TGCCGCGGACAGAAAAAATATTCAAACAGTCAACTTGTTCATAGATGTCATGGATGGGGTTGCCTACTCAGTCAACGATGAAATCCATGTTAGCGACAGT TATATAGCAAGTTATTCAGGTGATGTCAGAACAGAAATCACTGGGGTACTTTACCATGAAATGACACACATATGGCAATGGAATGGTAATGGACAAGCCC CAGGTGGACTAATTGAAGGGATTGCTGATTTTGTAAGGTTGAAGGCGAACTATGCACCTAGTCACTGGGTGCAACCAGGGCAGGGTGACAGGTGGGATCA AGGTTATGATGTTACGGCTAAGTTTTTGGACTATTGTAATGATCTTAGAAATGGGTTTGTTGCTGAGCTTAACAAGAAGATGATGACTGGCTATAGTGCT CAGTACTTTGTTGATCTGCTAGGGAAGACCGTTGATCAGCTCTGGACAGACTACAAGGCCCGGTACGGGCAATAG
AA sequence Show only first row Show all	>Potri.009G094600.1 pacid=42771574 polypeptide=Potri.009G094600.1.p locus=Potri.009G094600 ID=Potri.009G094600.1.v4.1 annot-version=v4.1 MFRHVYVLSLLVLLAINTVSAVDYTVTNRATATAGGARFITDIGVDYSKQTLASATDFIWETFQQSNAADRKNIQTVNLFIDVMDGVAYSVNDEIHVSDS YIASYSGDVRTEITGVLYHEMTHIWQWNGNGQAPGGLIEGIADFVRLKANYAPSHWVQPGQGDRWDQGYDVTAKFLDYCNDLRNGFVAELNKKMMTGYSA QYFVDLLGKTVDQLWTDYKARYGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15220			Plant basic secretory protein ...		Potri.009G094600 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	5.74	0.9990
					Potri.001G439900 [exp]	10.09	0.9989
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.001G335900 [exp]	11.83	0.9988
AT5G11210		ATGLR2.5	ARABIDOPSIS THALIANA GLU, glut...		Potri.001G375133 [exp]	13.41	0.9986
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195900 [exp]	13.96	0.9987	NQR.1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375100 [exp]	14.00	0.9986
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375000 [exp]	14.86	0.9984
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G024000 [exp]	15.65	0.9967
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095300 [exp]	16.12	0.9965
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.011G031800 [exp]	17.14	0.9918

Compare expression of checked genes

Potri.009G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.