Plant FIBer expression Database

Potri.009G094800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49820 685 / 0 MTK1, ATMTK 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G299700
[exp]
783 / 0 AT1G49820 653 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002806
[exp]
606 / 0 AT1G49820 558 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Lus10027857
[exp]
284 / 1e-95 AT1G49820 275 / 1e-92 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Lus10027858
[exp]
281 / 1e-94 AT1G49820 261 / 5e-87 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF01636 APH Phosphotransferase enzyme family
Representative CDS sequence
>Potri.009G094800.1 pacid=42771757 polypeptide=Potri.009G094800.1.p locus=Potri.009G094800 ID=Potri.009G094800.1.v4.1 annot-version=v4.1
ATGGTATTCACAGAGTTCAGGCCACTGGACGAGAAATATTTAGTGGAGTACATTAAGGCCACTCCTGCTTTGTCAGATAAGATCGGCAACAATTTCGACG
ACTTGAAGATCAAAGAAGTTGGCGATGGAAATCTCAATTTCGTCTACATCGTTGTTAGCCCAGCTGGTTCTTTTGTCATCAAGCAGGCAATTCCATACAT
ACGTTGTATTGGAGAATCATGGCCAATGACTAAGGAAAGAGCATACTTTGAGGCATTGACACTTAGAGAGCATGGCCGATGGAGCCCTGAAAATGTGCCT
GAAGTTTATCATTTTGACCGTATTATGTCTGTGATTGGTATGCGATATTTGGAGCCCCCACATATAATCCTGAGAAAAGGGTTGGTTGCTGGAATTGAGT
ATCCATTGCTAGCAGAACACATATCAGATTATATGGCAAAGACTCTTTACCACACATCGCTTCTTTTTCATACTACCACTGAGCATAAACACAACGTTGC
TGAATTCTGTGGGAACGTGGAGTTATGCAGGCTTACTGAGCAGGTTGTTTTCTCTGACCCTTACAAAGTATCCGAATATAACCGCTGGACTTCCCCTTAT
CTTGATCGTGATGCTGAGGCTGTCCGTGAAGATAATATTTTAAAGCTTGAAGTTGCTGAGTTGAAATCCAAGTTTTGTGAGAGAGCCCAAGCCTTAGTAC
ATGGAGATCTCCACACTGGATCCGTCATGGTTACCCATGAATCTACTCAAGTTATAGATCCAGAATTTGCATTTTATGGTCCCATGGGTTTTGATATTGG
AGCTTTTATTGGAAACTTGATATTGGCTTTTTTTGCTCAAGATGGACACGCTGATCAAGGGAATGACCGAAAAACATATAAAGAGTGGATTTTGAGGACA
ATTAAAGAGACCTGGAGTCTTTTCTACAAGAAGTTCACTGCACTGTGGGACGAGCACAAGGATGGCTCTGGTGAGGCATATCTTCCAGGAATTTATAATA
ACCCTGAGCTTCATCAGCTTGTACAGAGAAAATTCATGCAAGACTTGTTCCATGACACCTTGGGATTTGGTGCGGCCAAAATGATAAGGAGAATTGTTGG
TGTAGCTCATGTGGAGGATTTTGAATCAATTCCTGACGCTAGCAAACGAGCCCAATGTGAGCGGCCGGCTCTTGACCTGGCGAAGATGCTTATCAAGGAA
AGGCGAAAATTACAGTCCATAGATGAAGTTGTATCAGCCATTCAGCAACTGCAGTGA
AA sequence
>Potri.009G094800.1 pacid=42771757 polypeptide=Potri.009G094800.1.p locus=Potri.009G094800 ID=Potri.009G094800.1.v4.1 annot-version=v4.1
MVFTEFRPLDEKYLVEYIKATPALSDKIGNNFDDLKIKEVGDGNLNFVYIVVSPAGSFVIKQAIPYIRCIGESWPMTKERAYFEALTLREHGRWSPENVP
EVYHFDRIMSVIGMRYLEPPHIILRKGLVAGIEYPLLAEHISDYMAKTLYHTSLLFHTTTEHKHNVAEFCGNVELCRLTEQVVFSDPYKVSEYNRWTSPY
LDRDAEAVREDNILKLEVAELKSKFCERAQALVHGDLHTGSVMVTHESTQVIDPEFAFYGPMGFDIGAFIGNLILAFFAQDGHADQGNDRKTYKEWILRT
IKETWSLFYKKFTALWDEHKDGSGEAYLPGIYNNPELHQLVQRKFMQDLFHDTLGFGAAKMIRRIVGVAHVEDFESIPDASKRAQCERPALDLAKMLIKE
RRKLQSIDEVVSAIQQLQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G49820 MTK1, ATMTK 5-methylthioribose kinase 1, S... Potri.009G094800
[exp]
0 1
AT5G23590 DNAJ heat shock N-terminal dom... Potri.009G138100
[exp]
18.54 0.7189
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G028500
[exp]
44.74 0.7416
AT4G02050 STP7 sugar transporter protein 7 (.... Potri.006G189100
[exp]
52.97 0.7334 STA.1
AT5G02790 GSTL3 Glutathione transferase L3, Gl... Potri.006G133500
[exp]
64.35 0.7209
AT3G50930 BCS1 cytochrome BC1 synthesis (.1) Potri.009G119132
[exp]
64.65 0.7348
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein... Potri.007G097500
[exp]
65.45 0.7403
AT3G43740 Leucine-rich repeat (LRR) fami... Potri.009G090700
[exp]
71.55 0.7105
AT2G20500 unknown protein Potri.005G224200
[exp]
112.75 0.6826
AT1G17520 MYB Homeodomain-like/winged-helix ... Potri.006G147400
[exp]
153.83 0.6792
AT1G02880 TPK1 thiamin pyrophosphokinase1 (.1... Potri.014G130900
[exp]
154.45 0.7031

Potri.009G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.