Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15230 565 / 0 ATLIP1 lipase 1 (.1) AT5G14180 296 / 2e-97 MPL1 Myzus persicae-induced lipase 1 (.1) AT1G73920 78 / 2e-15 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G18460 73 / 1e-13 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159800 [exp] 340 / 2e-114 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 335 / 2e-112 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.014G159900 [exp] 324 / 5e-108 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.001G332300 [exp] 296 / 2e-97 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.017G069700 [exp] 244 / 3e-77 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1) Potri.012G060600 [exp] 70 / 1e-12 AT1G73920 917 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002808 [exp] 604 / 0 AT2G15230 551 / 0.0 lipase 1 (.1) Lus10027861 [exp] 500 / 1e-176 AT2G15230 438 / 2e-152 lipase 1 (.1) Lus10002809 [exp] 462 / 4e-164 AT2G15230 427 / 8e-151 lipase 1 (.1) Lus10015159 [exp] 316 / 5e-105 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10031523 [exp] 310 / 1e-102 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10038378 [exp] 303 / 1e-100 AT5G14180 377 / 2e-129 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 305 / 2e-100 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1) Lus10023171 [exp] 301 / 3e-99 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10015158 [exp] 298 / 4e-98 AT5G14180 351 / 2e-118 Myzus persicae-induced lipase 1 (.1) Lus10031524 [exp] 287 / 2e-93 AT5G14180 359 / 2e-121 Myzus persicae-induced lipase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G094900.1 pacid=42771737 polypeptide=Potri.009G094900.1.p locus=Potri.009G094900 ID=Potri.009G094900.1.v4.1 annot-version=v4.1 ATGGAGAGGATGTTACTGATCGTTTTCGCAATAATAATCTCACTTTTCATTTCCACATCTGCCGCCGGAGAATTCAATTTCGAAGCCAATCTCCATCGCC GATCACCGGACGAGACTCTGTGTAATCAGCTCATTAAACCAGCCGGTTATTCTTGCACCGAACACACTGTACAAACTAAAGATGGTTACTTGGTAGCTCT TCAACGCTTGTCTTCACGTAACAAGGATCTAGGAGGGCAGAGGGGTCCTCCTGTCTTGCTTCAACATGGACTCTTTATGGCAGGTGATGCATGGTTTTTA GGTTCTCCAGAGCAGTCACTGGGCTTCATCCTTGCAGATGAGGGTTTTGATGTATGGGTTGGCAATGTGCGTGGTACATTTTGGAGTCATGGACACATAT CCTTATCTGAGAAAGACAAGGAATTTTGGGACTGGAGTTGGGAGGAGTTGGCTCTATTTGATCTTGCTGAAATGATACACCATGTACATTCAGTAACAAG CTCTAAAGTTTTCATCGTTGGACATTCACAGGGGACCATCATGTCTTTAGCTGCTCTCATTCAGCCAAATGTTGTGGAAATGGTCGAAGCTGCTGCTCTA CTGTGTCCAATATCATACTTGGACCATGTAACTGCTCCTCTTGTTCTCAGAATGGTTGCCTTGCATCTTGATCAGATGGTCCTTGCCATGGGCATTCATC AATTGAATTTTAGAAGTAAAATCTTAATTGACCTTTTGGATTCCATATGCGATGGTCATATAGAATGCGCTGACTTGCTAACTTCCATAACAGGGAAGAA TTGTTGCTTTAATAGCTCAAGTGTGGACTTCTTTTTTGAATTTGAACCTCACCCATCATCAGCAAAAAACTTGCGCCATCTCTTTCAGATGATTCGTAAA GGAACTTTCTCTCACTATGACTACGGGATGTTTAAAAATTTGGAGCTATATGGTCAGTTAAATCCCCCAGCATTTGATCTCAGTCTCATACCCAAGACAT TGCCATTATGGATGGGCTATGGAGGCCATGATTCTTTAGCAGATGTGACAGATGTGGAGCGAACTCTGAAGGAGTTACAGGCCAAACCAGAATTGCTTTA TCTTGAGAACTATGGTCACTTGGACTTCCTTTTGAGCACACAAGGAAAGGAAGATGTTTACAACAATATGATCGCATTTTTCAGGTCGTTGGGGAAGTCC AGTAGTTCTTAA
AA sequence Show only first row Show all	>Potri.009G094900.1 pacid=42771737 polypeptide=Potri.009G094900.1.p locus=Potri.009G094900 ID=Potri.009G094900.1.v4.1 annot-version=v4.1 MERMLLIVFAIIISLFISTSAAGEFNFEANLHRRSPDETLCNQLIKPAGYSCTEHTVQTKDGYLVALQRLSSRNKDLGGQRGPPVLLQHGLFMAGDAWFL GSPEQSLGFILADEGFDVWVGNVRGTFWSHGHISLSEKDKEFWDWSWEELALFDLAEMIHHVHSVTSSKVFIVGHSQGTIMSLAALIQPNVVEMVEAAAL LCPISYLDHVTAPLVLRMVALHLDQMVLAMGIHQLNFRSKILIDLLDSICDGHIECADLLTSITGKNCCFNSSSVDFFFEFEPHPSSAKNLRHLFQMIRK GTFSHYDYGMFKNLELYGQLNPPAFDLSLIPKTLPLWMGYGGHDSLADVTDVERTLKELQAKPELLYLENYGHLDFLLSTQGKEDVYNNMIAFFRSLGKS SSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15230		ATLIP1	lipase 1 (.1)		Potri.009G094900 [exp]	0	1
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.009G115800 [exp]	1.73	0.7039
AT2G06025			Acyl-CoA N-acyltransferases (N...		Potri.006G142100 [exp]	15.19	0.6575
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G068400 [exp]	17.49	0.6427	Pt-CIPK24.1
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Potri.001G112700 [exp]	18.81	0.5850
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.012G060100 [exp]	21.97	0.6880
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	24.59	0.6293
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.006G057600 [exp]	25.07	0.6608
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Potri.001G374100 [exp]	36.19	0.6990
AT3G58500		PP2A-4, EP7, PP...	protein phosphatase 2A-4 (.1)		Potri.016G062000 [exp]	41.89	0.6407
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	42.21	0.6076

Compare expression of checked genes

Potri.009G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.