Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15480 498 / 1e-173 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 465 / 6e-161 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 465 / 8e-161 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 463 / 6e-160 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 271 / 1e-85 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT4G15550 260 / 4e-81 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT2G23250 258 / 1e-80 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT1G05675 258 / 2e-80 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 257 / 2e-80 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G43840 248 / 7e-77 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095300 [exp] 901 / 0 AT4G15480 528 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095400 [exp] 892 / 0 AT4G15480 488 / 2e-169 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095500 [exp] 325 / 6e-106 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.007G049600 [exp] 324 / 7e-106 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 319 / 1e-103 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.001G389200 [exp] 285 / 1e-90 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140500 [exp] 281 / 2e-89 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 275 / 5e-87 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032700 [exp] 269 / 9e-85 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014105 [exp] 471 / 1e-163 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10019808 [exp] 463 / 4e-160 AT4G15480 471 / 9e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10019809 [exp] 416 / 1e-141 AT4G15490 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10027862 [exp] 403 / 9e-137 AT4G15480 414 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 265 / 5e-83 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 258 / 3e-80 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 248 / 1e-76 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 248 / 2e-76 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 241 / 1e-73 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10006353 [exp] 237 / 3e-72 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G095100.1 pacid=42772543 polypeptide=Potri.009G095100.1.p locus=Potri.009G095100 ID=Potri.009G095100.1.v4.1 annot-version=v4.1 ATGGTTTCCGAGTCTCTTGGCCATCTCTTCCTTGTTTCTTTCCCAGGCCAAGGCCATGTAAATCCTTTACTTAGACTTGGAAAAATTCTTGCCTCCAAAG GCTTCCTTGTCACCTTCTCCACTACAGAAACCACTGGCGAACAGATGAGACAAGCCAGTGACATCATAGATAAGCTGACCCCGTTTGGTGATGGCTTTAT CCGGTTTGAATTCTTTGCAGATGGATGGGAAGAGGACGAGGATAGGCACCAAGACCTTGATCAATACTTACTTCAACTTGAGCTTGTTGGTAAACAAGTA ATTCCTCAAATGATCAAGAAAAATGCAGAGCAAGGGCGGCCTGTTTCTTGCCTCATAAACAACCCTTTCATTCCTTGGGTTACAGATGTGGCCACAAGTC TAGGTCTCCCTTCTGCAATGCTTTGGGTTCAATCCTGCGCTTGTTTTGCCTCATATTACCATTACTATCACGGTACTGTACCTTTCCCTGATGAGGAGCA CCCCGAGATAGATGTCCAACTACCATGGATGCCTCTCCTAAAATATGATGAAGTGCCTAGTTACTTGTATCCTACAACTCCTTATCCTTTCTTGAGGAGG GCTATTTTAGGTCAGTACAAAAATCTTGACAAGCCATTTTGCATCCTGATGGAAACATTCGAAGAGCTTGAACCAGAGCTTATCAAGCACATGTCCGAAA TCTTCCCCATCAGGGCCGTTGGGCCGCTATTCAGAAATACTAAGGCACCAAAGACAACGGTCCATGGAGACTTCCTGAAGGCAGATGATTGCATCGAATG GCTTGACACAAAGCCACCTTCATCAGTTGTTTACGTGTCTTTCGGTAGTGTCGTACAATTGAAGCAAGACCAATGGAACGAGATCGCTTATGGGTTTTTG AATTCGGGCGTCTCCTTCTTGTTAGTTATGAAACCAGCCCACAAAGATGCAGGACATGACCTCCTTGTTCTGCCAGATGGGTTCTTGGAGAAAGCAGGAG ACAGGGGCAAAGTGGTGCAATGGAGTCCTCAAGAGAAGGTTTTAGGTCACCCATCAGTTGCGTGCTTTGTAACACATTGTGGGTGGAACTCTACTATGGA AGCACTCACATCAGGCATGCCAGTGGTGGCTTTCCCTCAATGGGGTGATCAAGTAACTAATGCAAAATATTTGGTCGACATCCTTAAGGTTGGTGTGAGA ATGTGCCGCGGAGAAGCAGAGAACAAACTGATTACTCGTGATGAGATAGAGAAATGCTTGTTGGAGGCCACAGTGGGACCTAAGGCAGTGGAAATGAAGC AGAATGCAATGAAATGGAAGGAGGCAGCCGCGGCAGCAGTGGCTGAGGGTGGTTCCTCCGACTGGAATATACGATATTTTACAGACGATATTGTAAAAGC GAATGAGTCTGAGATCGCTAGAAAGTGTATTGGTTCTAATGAGTTTCCAGTGTCGGTAGTGGTGAAGTCCAACGAGAAAGTCGATGAACTGGTGGGGTCA TCGGCATGA
AA sequence Show only first row Show all	>Potri.009G095100.1 pacid=42772543 polypeptide=Potri.009G095100.1.p locus=Potri.009G095100 ID=Potri.009G095100.1.v4.1 annot-version=v4.1 MVSESLGHLFLVSFPGQGHVNPLLRLGKILASKGFLVTFSTTETTGEQMRQASDIIDKLTPFGDGFIRFEFFADGWEEDEDRHQDLDQYLLQLELVGKQV IPQMIKKNAEQGRPVSCLINNPFIPWVTDVATSLGLPSAMLWVQSCACFASYYHYYHGTVPFPDEEHPEIDVQLPWMPLLKYDEVPSYLYPTTPYPFLRR AILGQYKNLDKPFCILMETFEELEPELIKHMSEIFPIRAVGPLFRNTKAPKTTVHGDFLKADDCIEWLDTKPPSSVVYVSFGSVVQLKQDQWNEIAYGFL NSGVSFLLVMKPAHKDAGHDLLVLPDGFLEKAGDRGKVVQWSPQEKVLGHPSVACFVTHCGWNSTMEALTSGMPVVAFPQWGDQVTNAKYLVDILKVGVR MCRGEAENKLITRDEIEKCLLEATVGPKAVEMKQNAMKWKEAAAAAVAEGGSSDWNIRYFTDDIVKANESEIARKCIGSNEFPVSVVVKSNEKVDELVGS SA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095100 [exp]	0	1
AT1G47510		AT5PTASE11, 5PT...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.014G039800 [exp]	1.00	0.9559
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019300 [exp]	3.16	0.9237
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095400 [exp]	4.89	0.8845
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	6.00	0.9129
AT4G39230			NmrA-like negative transcripti...		Potri.009G118100 [exp]	6.48	0.9036
AT5G43260			chaperone protein dnaJ-related...		Potri.001G056601 [exp]	11.22	0.9032
AT5G54585			unknown protein		Potri.011G130400 [exp]	12.64	0.8873
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177700 [exp]	13.41	0.8815	ENOD8.3
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088600 [exp]	13.60	0.9096
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	16.73	0.8672	MYB194

Compare expression of checked genes

Potri.009G095100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.