Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15480 528 / 0 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 491 / 5e-171 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 489 / 2e-170 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 478 / 8e-166 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 290 / 5e-93 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT2G23250 283 / 3e-90 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT1G05675 283 / 4e-90 UDP-Glycosyltransferase superfamily protein (.1) AT4G15550 283 / 4e-90 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05680 278 / 2e-88 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G43840 265 / 2e-83 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095100 [exp] 905 / 0 AT4G15480 496 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095400 [exp] 880 / 0 AT4G15480 488 / 2e-169 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095500 [exp] 358 / 6e-119 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 352 / 2e-116 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.007G049600 [exp] 344 / 1e-113 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.007G140500 [exp] 301 / 5e-97 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.001G389200 [exp] 298 / 4e-96 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 290 / 4e-93 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032700 [exp] 284 / 2e-90 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014105 [exp] 482 / 1e-167 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10019808 [exp] 475 / 4e-165 AT4G15480 471 / 9e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10019809 [exp] 433 / 2e-148 AT4G15490 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10027862 [exp] 419 / 7e-143 AT4G15480 414 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 282 / 9e-90 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 271 / 2e-85 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 263 / 2e-82 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 261 / 7e-82 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 258 / 2e-80 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10006352 [exp] 256 / 2e-79 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G095300.1 pacid=42772731 polypeptide=Potri.009G095300.1.p locus=Potri.009G095300 ID=Potri.009G095300.1.v4.1 annot-version=v4.1 ATGGTTTCAAAGTCTCTTGGCCATCTCTTCCTTGTTTCTTTCCCAGGCCAAGGCCATGTAAATCCTTTACTTAGACTTGGAAAAATTCTTGCCTCCAAAG GCTTCCTTGTCACCTTCTCCACCACTGAAACCACTGGCAAAGAGATGAGAGAAGCCAGTGACATCATTGATAAGCTAACCCCGTTTGGTGATGGCTTTAT CCGGTTTGAATTCTTTGAAGATGGATGGAAAGAGGACGAGCCTAGGCACCAAGACCTTGACCAGTACTTACTTCAACTTGAGCTTGTTGGTAAACAAGTA ATTCCTCAAATGATCAAGAAAAATGCAGAGCAAGGGCGGCCTGTTTCTTGCCTCATAAACAACCCTTTCATTCCTTGGGTTACAGATGTGGCCACAGGTC TAGGTCTCCCTTCTGCAATGCTTTGGGTTCAATCCTGCGCTTGTTTTGCCTCATATTACCATTACTATCACGGTGCTGTACCTTTCCCTGATGAGGAGCA CCCCGAGATAGATGTCCAACTACCATGGATGCCTCTCCTAAAACATGATGAAGTGCCTAGTTTCTTATATCCTACAACTCCTTATCCTTTCTTGAGGAGG GCTATTTTAGGTCAGTACAAAAATCTTGACAAGCCATTTTGCATCCTGATGGAAACATTCGAAGAGCTTGAACCAGAGCTTATCAAGCACATGTCCGAAA TCTTCCCCATCAAGACCGTTGGGCCACTATTCAGAAATCCTAAGGTACTAAAGACAACGGTCCATGGAGACTTCCTGAAGGCAGATGATTGCATCGAATG GCTTGACACAAAGCCACCTTCATCAGTTATTTATGTGTCTTTCGGTAGTGTCGTACAATTGAAGCAAGACCAATGGAACGAGATGGCTTGTGGGTTACTG AATTCGGGCGTCTCCTTCTTGTTAGTTATGAAACCACCCCACAAAGATTCAGGAAATGACCTCCTTGTTCTGCCAGATGGGTTCTTGGAGAAAGCAGGAG ACAGGGGCAATGTGGTGCAATGGAGTCCTCAAGAGAAGGTTTTAGGTCACCCATCAGTTGCGTGCTTTGTAACACATTGTGGGTGGAACTCTACTATGGA AGCACTCACATCAGGCATGCCAGTGGTGGCTTTCCCTCAATGGGGTGATCAAGTAACTAATGCAAAATATTTGGTCGACATCCTTAAGGTTGGTGTGAGA TTGTGCCGCGGAGAAGCAGAGAACAAACTGATTACTCGTGATGAGATAGAGAAATGCTTGTTGGAGGCCACAGTGGGACCTAAGGCAGTGGAAATGAAGC AGAATGCAATGAAATGGAAGGAGGCAGCCGAGGCAGCAGTGGCTGAGGGTGGTTCCTCCGACTGGAATATACGATATTTTACTGACGATATTGTAAAAGC GAATGAGTCTGAGATTGCTGGGAAGTGCATTGGTTCTAATGAGTTTCCAGTGTCGGTAGTGGTGAAGTCCAACGAGAAAGTGGTTGAACTGGTGGGGTGA
AA sequence Show only first row Show all	>Potri.009G095300.1 pacid=42772731 polypeptide=Potri.009G095300.1.p locus=Potri.009G095300 ID=Potri.009G095300.1.v4.1 annot-version=v4.1 MVSKSLGHLFLVSFPGQGHVNPLLRLGKILASKGFLVTFSTTETTGKEMREASDIIDKLTPFGDGFIRFEFFEDGWKEDEPRHQDLDQYLLQLELVGKQV IPQMIKKNAEQGRPVSCLINNPFIPWVTDVATGLGLPSAMLWVQSCACFASYYHYYHGAVPFPDEEHPEIDVQLPWMPLLKHDEVPSFLYPTTPYPFLRR AILGQYKNLDKPFCILMETFEELEPELIKHMSEIFPIKTVGPLFRNPKVLKTTVHGDFLKADDCIEWLDTKPPSSVIYVSFGSVVQLKQDQWNEMACGLL NSGVSFLLVMKPPHKDSGNDLLVLPDGFLEKAGDRGNVVQWSPQEKVLGHPSVACFVTHCGWNSTMEALTSGMPVVAFPQWGDQVTNAKYLVDILKVGVR LCRGEAENKLITRDEIEKCLLEATVGPKAVEMKQNAMKWKEAAEAAVAEGGSSDWNIRYFTDDIVKANESEIAGKCIGSNEFPVSVVVKSNEKVVELVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095300 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Potri.001G255100 [exp]	1.00	0.9980	Pt-GNS1.4
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.011G031800 [exp]	5.65	0.9956
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.006G055600 [exp]	9.79	0.9968	Pt-ZOG1.15
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	12.36	0.9966
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.003G213700 [exp]	15.09	0.9965
AT2G15220			Plant basic secretory protein ...		Potri.009G094600 [exp]	16.12	0.9965
AT1G52565			unknown protein		Potri.001G192800 [exp]	18.76	0.9916
					Potri.003G165550 [exp]	18.81	0.9862
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.001G335900 [exp]	21.00	0.9963
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Potri.001G093401 [exp]	21.90	0.9767

Compare expression of checked genes

Potri.009G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.