Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15480 488 / 1e-169 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 453 / 3e-156 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 451 / 1e-155 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 439 / 2e-150 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 276 / 1e-87 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 269 / 6e-85 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT4G15550 259 / 8e-81 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT2G23260 258 / 1e-80 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT2G43840 249 / 2e-77 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G23250 247 / 1e-76 UGT84B2 UDP-glucosyl transferase 84B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095100 [exp] 867 / 0 AT4G15480 496 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095300 [exp] 852 / 0 AT4G15480 528 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G049600 [exp] 316 / 9e-103 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095500 [exp] 315 / 4e-102 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 308 / 1e-99 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.001G389200 [exp] 280 / 6e-89 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140500 [exp] 280 / 7e-89 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032700 [exp] 276 / 2e-87 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 276 / 2e-87 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014105 [exp] 454 / 9e-157 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10019808 [exp] 451 / 3e-155 AT4G15480 471 / 9e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10019809 [exp] 399 / 3e-135 AT4G15490 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10027862 [exp] 390 / 8e-132 AT4G15480 414 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 267 / 7e-84 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 260 / 7e-81 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 253 / 1e-78 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 250 / 2e-77 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 238 / 6e-73 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 238 / 8e-73 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G095400.1 pacid=42772892 polypeptide=Potri.009G095400.1.p locus=Potri.009G095400 ID=Potri.009G095400.1.v4.1 annot-version=v4.1 ATGGTTTCCGAGTCTCTTGGCCATCTCTTCCTTGTTTCTTTCCCAGCCCAAGGCCATGTAAATCCTTTACTTAGACTTGGAAAAATTCTTGCCTCCAAAG GCTTCCTTGTCACCTTCTCCAGTACTGAAATCACTGGCAAACAGATGAGACAAGCCAGTGACATCATAGATAAGCTGACCCCGTTTGGTGATGGCTTTAT CCGGTTTGAATTCTTTGAAGATGGATGGGAAGAGGACGAGGACAGGCACCAAGACCTTGATAAATACTTACTTCAACTTGAGCTTGTTGGTAAACAAGTA ATTCCTCAAATGATCAAGAAAAATGCAGAGCAAGGGCGGCCTGTTTCTTGCCTCATAAACAACCCTTTCATTCCTTGGGTTACAGATGTGGCCACAAGTC TAGGTCTCCCTTCTGCAATGCTTTGGATTCAATCCTGCGCTTGTTTTGCCTCATATTACCATTACTATCACGGTACTGTACCTTTCCCTGATGAGGAGCA CCCCGAGATAGATGTCCAATTACCATGCAATATGCCTCTCCTAAAACATGATGAAGTGCCTAGTTTCTTATATCCTACAACTCCTTATCCTTTCTTGAGG AGGGCTATTTTAGGTCAGTACAAAAATCTTGACAAGCCATTTTGCATCCTGATGGAAACATTCGAAGAGCTTGAACCAGAGCTTATCAAGCACATGTCCG AAATCTTCCCTATCAAGGCCGTTGGGCCGCTATTCAGAAATCCTAAGGCATCAAAGACAACGGTCCATGGAGACTTGCTGAAGGCAGATGATTGCATCGA ATGGCTTGACACAAAGCCACCTTCATCAGTTGTTTATGTGTCTTTCGGTAGTGTCGTACAATTGAAGCAAGACCAATGGAACGAGATGGCTTGTGGGTTA CTGAATTCGGGGGTCTCCTTCTTGATAGTTATGAAACCAACCCAGAAAGATACAGGACATATTGACCTCCTTGTTCTGCCAGATTGGTTCTTGGAGAAAG CAGGAGACAGGGGCAAGGTGGTGCAATGGAGTCCTCAAGAGAAGGTTTTAACTCACCCATCAGTTGCGTGCTTTGTAACACATTGTGGGTGGAACTCTTC TATGGAAGCACTCACATCAGGCATGCCAGTGGTGGCTTTCCCTCAATGGGGTGATCAAGTAACTAATGCAAAATATTTGGTCGACATCCTTAAGGTTGGT GTGAGAATGAGCCGCGGAGAAGCAGAGAACAAACTGATTACTCGTGATGAGATAGAGAAATGCTTGTTGGAGGCCACAGTGGGACCTAAGGCAGTGGAAA TGAAGCAGAATGCAATGAAATGGAAGGAGGCAGCCGCGGCAGCAGTGGCTGAGGGTGGTTCCTCCGACTGGAATATACGATCTTTTACTGACGATATTGT AAAAGCGAAGGAGTCTGAGATTGCTAGAAAGTGTATTGGTTCTAATGAGTTTCTAGTGTCGGTAGTGGTGAAGTCCAACGAGAAAGTGGTTGAACTGGTG GGGTCATCGGCATGA
AA sequence Show only first row Show all	>Potri.009G095400.1 pacid=42772892 polypeptide=Potri.009G095400.1.p locus=Potri.009G095400 ID=Potri.009G095400.1.v4.1 annot-version=v4.1 MVSESLGHLFLVSFPAQGHVNPLLRLGKILASKGFLVTFSSTEITGKQMRQASDIIDKLTPFGDGFIRFEFFEDGWEEDEDRHQDLDKYLLQLELVGKQV IPQMIKKNAEQGRPVSCLINNPFIPWVTDVATSLGLPSAMLWIQSCACFASYYHYYHGTVPFPDEEHPEIDVQLPCNMPLLKHDEVPSFLYPTTPYPFLR RAILGQYKNLDKPFCILMETFEELEPELIKHMSEIFPIKAVGPLFRNPKASKTTVHGDLLKADDCIEWLDTKPPSSVVYVSFGSVVQLKQDQWNEMACGL LNSGVSFLIVMKPTQKDTGHIDLLVLPDWFLEKAGDRGKVVQWSPQEKVLTHPSVACFVTHCGWNSSMEALTSGMPVVAFPQWGDQVTNAKYLVDILKVG VRMSRGEAENKLITRDEIEKCLLEATVGPKAVEMKQNAMKWKEAAAAAVAEGGSSDWNIRSFTDDIVKAKESEIARKCIGSNEFLVSVVVKSNEKVVELV GSSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095400 [exp]	0	1
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	3.46	0.8775	MYB194
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095100 [exp]	4.89	0.8845
AT2G30150			UDP-Glycosyltransferase superf...		Potri.001G281800 [exp]	5.47	0.8326
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	13.41	0.8908	ANR/BAN2,Pt-BAN.1
AT3G54200			Late embryogenesis abundant (L...		Potri.016G142300 [exp]	17.29	0.8474
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.007G089000 [exp]	19.28	0.8604	Pt-MIPS.2
AT2G27140			HSP20-like chaperones superfam...		Potri.012G070100 [exp]	20.71	0.8223
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140300 [exp]	23.47	0.8421	ZOG1.10
AT2G17500			Auxin efflux carrier family pr...		Potri.005G099300 [exp]	24.18	0.8459
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	24.39	0.8586

Compare expression of checked genes

Potri.009G095400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.