Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49800 37 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299800 [exp] 116 / 3e-35 AT1G49800 44 / 1e-06 unknown protein Potri.007G049500 [exp] 49 / 1e-08 AT4G37290 48 / 1e-08 unknown protein Potri.005G142900 [exp] 48 / 2e-08 AT4G37290 44 / 4e-07 unknown protein Potri.016G015600 [exp] 42 / 3e-06 AT4G37290 45 / 2e-07 unknown protein Potri.001G299900 [exp] 42 / 6e-06 AT1G49800 48 / 2e-08 unknown protein Potri.007G049400 [exp] 41 / 8e-06 AT4G37290 46 / 5e-08 unknown protein Potri.006G008066 [exp] 39 / 0.0002 AT2G23270 45 / 2e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010255 [exp] 50 / 3e-09 AT4G37290 54 / 6e-11 unknown protein Lus10019310 [exp] 45 / 4e-07 AT4G37290 56 / 1e-11 unknown protein Lus10011512 [exp] 44 / 6e-07 AT4G37290 57 / 3e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G095600.2 pacid=42772425 polypeptide=Potri.009G095600.2.p locus=Potri.009G095600 ID=Potri.009G095600.2.v4.1 annot-version=v4.1 ATGTCTAGCATGGGGAGAGAACAAAAACCTGTAATCCTCTCTTCTCTTCTTCTTCTTCTTGGTTCTCTCTTGATAATCACCATGGTTGTCGGCACAGAAG CTCGGCCTTTGAGTGGTTCAAGGCTGAATAAAGATGTTAATGTTGGAGGGATTGAAGGTCTTATTGGAGGATTTTCTCTCCAAGCAGTGAAGAAGTCAGG GCCGAGCCCAGGTATTGGTCATAAATACGAAAACTTTCAAACTCAAGGAGAGGCTACAAATTCTGTTTCGAGTCCTGGCGAGGGACATAAGCACGTTATT AATGGCAATAAACCGTAA
AA sequence Show only first row Show all	>Potri.009G095600.2 pacid=42772425 polypeptide=Potri.009G095600.2.p locus=Potri.009G095600 ID=Potri.009G095600.2.v4.1 annot-version=v4.1 MSSMGREQKPVILSSLLLLLGSLLIITMVVGTEARPLSGSRLNKDVNVGGIEGLIGGFSLQAVKKSGPSPGIGHKYENFQTQGEATNSVSSPGEGHKHVI NGNKP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49800			unknown protein		Potri.009G095600 [exp]	0	1
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.006G181800 [exp]	4.89	0.7746
AT2G23090			Uncharacterised protein family...		Potri.014G018400 [exp]	10.39	0.8239
					Potri.010G219350 [exp]	14.49	0.7476
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Potri.001G196400 [exp]	17.00	0.7038	Pt-LBD22.1
AT1G24520		BCP1	homolog of Brassica campestris...		Potri.012G095900 [exp]	27.98	0.7093
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.001G068900 [exp]	40.47	0.7799
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	49.95	0.7839
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017601 [exp]	92.37	0.7248
AT1G21860		SKS7	SKU5 similar 7 (.1)		Potri.010G229500 [exp]	117.04	0.7391
AT1G53400			Ubiquitin domain-containing pr...		Potri.001G387400 [exp]	166.52	0.7353

Compare expression of checked genes

Potri.009G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.