Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) AT1G78910 288 / 2e-92 Pseudouridine synthase family protein (.1) AT1G76050 72 / 1e-13 Pseudouridine synthase family protein (.1.2) AT3G52260 71 / 4e-13 Pseudouridine synthase family protein (.1.2.3) AT1G56345 56 / 2e-08 Pseudouridine synthase family protein (.1) AT5G51140 54 / 8e-08 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228200 [exp] 286 / 1e-91 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G016800 [exp] 71 / 5e-13 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.008G042000 [exp] 70 / 7e-13 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.015G101300 [exp] 54 / 2e-07 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002811 [exp] 568 / 0 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10027863 [exp] 556 / 0 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1) Lus10033350 [exp] 283 / 4e-90 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1) Lus10034804 [exp] 281 / 2e-89 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1) Lus10017250 [exp] 74 / 5e-14 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005619 [exp] 72 / 5e-13 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10023503 [exp] 64 / 1e-10 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3) Lus10022437 [exp] 62 / 7e-10 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10040385 [exp] 54 / 2e-07 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [poplar] [flax] PseudoU_synth PF00849 [poplar] [flax] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Potri.009G095700.1 pacid=42771425 polypeptide=Potri.009G095700.1.p locus=Potri.009G095700 ID=Potri.009G095700.1.v4.1 annot-version=v4.1 ATGATGATGGTGTACGCCACGCTCCTCGGCCGTGTCCTCCTCCAACCATCACGGTCAATCTCCTCACTCCATGCAACCAAACCGTCCATCTCAACCGTCC GCGTACTCCAATCTCGGTACACCACCAACACCAAAAGCCAAAATCATTATGAGAATGACAAGAGAGGGAAATGGTTCACTTTACCTCCTTACACTTCGAC TATCAATGGCAGCGTTTTGGGAATAGCGCTTTCTGCAAGAATCCCCGCAAAATCAGCTTCTGAAACGACAGCGCTTAAGTGGGTACTTCGTTGTTGCCCT GAACTCCCTAGAAACCTTGTACAAAAGCTGTTTCGCTTAAGACAGGTACGAAGAGAGTCCCCTGTCATGGAAAGTTGTAATCTTGGTGATCAAGGACAGG AACATCGGCTGAAAAGAGTGGCAGCTAAGGATTCGATGGATGTAGGAGATAGAATTTTTCTTCCTATTAGTGTCAAAGTGTTACCTGCTGAGAAACAAGA CTGTCATTGCAATGAAGAAGAAATAAACTTTATTCGTGGCCTTGAGCTGTATAAGGATGCTGCAATCATTGTTGTCAATAAACCTCCCGGAATGCCTGTT CAGGGTGGCATTGGCATCAAAAGAAGTTTAGATGAATTGTCAGCTAGTTGCTTTAGTTCTGACTACTCAGAACCCCCACGGCTGGTTCATAGACTTGACA GAGATTGCAGTGGTATCTTGGTGATGGGAAGGACACAAACAAGTGCGACAGTTTTGCATGCCATCTTCCGGGAGAAAACTCTTGCAGCATCAAATGATGA CGTGGGTAACAAAAGAAGAATCCTGCAAAGAAAATACTGGGCACTTGTCATTGGTTCTCCAAGACGTCCAAAGGGATTAATTTCAGCACCATTGGGAAAG GTGGTTGTGGACAATGGAAAATCTGATCGAATAACAGTGGTTGAGAATTCACAAAACTTGTCTTCTCAGCATGCAGTTACACAGTACAGAGTAATTGAAT CATCTCATGGCTTCACATGGTTGGAGCTGTCCCCTCTCACTGGTAGAAAGCATCAGCTCCGTGTACACTGTGCTGAAGTATTGGGGACGCCAATAGTTGG AGACTACAAATACGCATGGCAAGCTCACAGGAATTGGAAACAGTTGCAATGGTCTAATATTGAAGATAACTCAAATGATAAGTCCCTAAGTGAGAAAATA CTCCCTTTCGCCCTTGATTTGGATAGTGGTAGTATCTCTGAAAAGCACCCCCGCCTACATCTCCACTGCAAACAAATGGTTTTACCCGATGTATCTAAAG CTTTGCAAGATGTGCAATTATCTTCAGACTATGACTTCTCACAATTGGCTAGCCTCAAGTTTGATGCTCCTTTACCTCCTTATATGAAAAAAAGTTGGGA TATTTTGAGACCATGA
AA sequence Show only first row Show all	>Potri.009G095700.1 pacid=42771425 polypeptide=Potri.009G095700.1.p locus=Potri.009G095700 ID=Potri.009G095700.1.v4.1 annot-version=v4.1 MMMVYATLLGRVLLQPSRSISSLHATKPSISTVRVLQSRYTTNTKSQNHYENDKRGKWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCP ELPRNLVQKLFRLRQVRRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQDCHCNEEEINFIRGLELYKDAAIIVVNKPPGMPV QGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGK VVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKI LPFALDLDSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDILRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19440			Pseudouridine synthase family ...		Potri.009G095700 [exp]	0	1
AT3G56200			Transmembrane amino acid trans...		Potri.010G181800 [exp]	1.41	0.8525
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.013G042000 [exp]	5.38	0.7647
AT5G23690			Polynucleotide adenylyltransfe...		Potri.015G104300 [exp]	15.87	0.7433
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.010G199700 [exp]	20.29	0.8164
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	26.15	0.7591
AT1G70650			Ran BP2/NZF zinc finger-like s...		Potri.010G107400 [exp]	30.98	0.7723
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072566 [exp]	42.84	0.7594
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	50.91	0.7676	Pt-SPY.1
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.014G126000 [exp]	72.46	0.7307
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	72.47	0.7245	Pt-UBP15.2

Compare expression of checked genes

Potri.009G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.