Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAD,Pt-CAD4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19450 475 / 7e-169 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 465 / 5e-165 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT4G39330 318 / 5e-107 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21890 305 / 6e-102 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 301 / 2e-100 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G37970 288 / 2e-95 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37990 276 / 1e-90 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 260 / 2e-84 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT1G72680 211 / 2e-65 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307200 [exp] 322 / 2e-108 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 314 / 1e-105 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.016G065300 [exp] 301 / 2e-100 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.009G063400 [exp] 300 / 8e-100 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G268600 [exp] 296 / 1e-98 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 295 / 6e-98 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.002G018300 [exp] 271 / 6e-89 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 267 / 6e-87 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.011G148100 [exp] 236 / 2e-75 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019811 [exp] 511 / 0 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 511 / 0 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002812 [exp] 511 / 0 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027864 [exp] 508 / 0 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002089 [exp] 301 / 1e-100 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 298 / 3e-99 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 294 / 8e-98 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 283 / 3e-93 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10017285 [exp] 279 / 1e-91 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 271 / 2e-88 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.009G095800.1 pacid=42771798 polypeptide=Potri.009G095800.1.p locus=Potri.009G095800 ID=Potri.009G095800.1.v4.1 annot-version=v4.1 ATGGGTAGCCTTGAAACAGAGAGAAAAATTGTAGGATGGGCAGCAACAGACTCAACTGGGCATCTCGCTCCTTACACCTATAGTCTCAGAGATACAGGGC CAGAAGATGTTTTTATCAAGGTTATCAGCTGTGGAGTTTGCCATACCGATATCCACCAAATCAAAAATGATCTTGGCATGTCACACTATCCTATGGTCCC TGGCCATGAAGTGGTTGGTGAGGTTGTTGAGGTGGGATCAGATGTGACAAAGTTCAAAGTTGGAGATGTTGTCGGTGTTGGAGTCATCGTTGGAAGCTGC AAGAATTGTCATCCATGCAAATCAGAGATTGAGCAATACTGCAACAAGAAAATCTGGTCTTACAATGATGTCTACACTGATGGCAAACCCACCCAAGGAG GCTTTGCTGAATCCATGGTTGTCGATCAAAAGTTTGTGGTGAGAATTCCTGATGGGATGTCACCAGAACAAGCAGCGCCGCTATTGTGCGCTGGATTGAC AGTTTACAGCCCTCTTAAACACTTTGGACTGAAACAGAGTGGGCTAAGAGGAGGGATTTTAGGACTTGGAGGAGTAGGGCACATGGGGGTGAAGATAGCA AAGGCAATGGGACACCACGTAACTGTGATTAGTTCTTCTGACAAGAAGCGGGAGGAGGCTATGGAACATCTTGGTGCTGATGAATACTTGGTCAGCTCGG ATGTGGAAAGCATGCAAAAAGCTGCTGATCAACTTGACTATATCATCGATACTGTGCCTGTGGTTCACCCTCTCGAGCCTTACCTTTCTCTATTGAAGCT TGATGGCAAGCTGATCTTGATGGGTGTTATTAATGCCCCATTGCAGTTTGTTACGCCTATGGTTATGCTTGGGAGAAAGTCAATCACCGGGAGCTTCATA GGGAGCATGAAGGAGACAGAGGAGATGCTTGAGTTCTGCAAGGAAAAGGGATTGGCCTCCATGATTGAAGTGATCAAAATGGATTATATCAACACAGCAT TCGAGAGGCTTGAGAAAAATGATGTGAGATATAGATTCGTTGTCGATGTTGCTGGTAGCAAGCTTATTCCCTGA
AA sequence Show only first row Show all	>Potri.009G095800.1 pacid=42771798 polypeptide=Potri.009G095800.1.p locus=Potri.009G095800 ID=Potri.009G095800.1.v4.1 annot-version=v4.1 MGSLETERKIVGWAATDSTGHLAPYTYSLRDTGPEDVFIKVISCGVCHTDIHQIKNDLGMSHYPMVPGHEVVGEVVEVGSDVTKFKVGDVVGVGVIVGSC KNCHPCKSEIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGLRGGILGLGGVGHMGVKIA KAMGHHVTVISSSDKKREEAMEHLGADEYLVSSDVESMQKAADQLDYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFI GSMKETEEMLEFCKEKGLASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGSKLIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.009G095800 [exp]	0	1	CAD,Pt-CAD4.1
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.019G053300 [exp]	2.44	0.8665
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Potri.009G006500 [exp]	2.82	0.8580
AT4G00755			F-box family protein (.1.2)		Potri.014G076300 [exp]	4.69	0.8649
AT5G43150			unknown protein		Potri.008G152200 [exp]	6.48	0.8619
AT5G01430			Got1/Sft2-like vescicle transp...		Potri.007G124400 [exp]	10.39	0.8477
AT3G52790			peptidoglycan-binding LysM dom...		Potri.008G030200 [exp]	17.20	0.8488
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.008G038100 [exp]	20.04	0.8528
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	20.14	0.8491	Pt-RIC2.2
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	22.02	0.8552
AT1G67300			Major facilitator superfamily ...		Potri.018G083200 [exp]	24.28	0.7575

Compare expression of checked genes

Potri.009G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.