Plant FIBer expression Database

Potri.009G095900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15240 379 / 1e-134 UNC-50 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G300100
[exp]
420 / 1e-150 AT2G15240 342 / 5e-120 UNC-50 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002813
[exp]
274 / 7e-94 AT2G15240 281 / 8e-97 UNC-50 family protein (.1)
Lus10027865
[exp]
206 / 1e-66 AT2G15240 215 / 7e-71 UNC-50 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05216 UNC-50 UNC-50 family
Representative CDS sequence
>Potri.009G095900.1 pacid=42771695 polypeptide=Potri.009G095900.1.p locus=Potri.009G095900 ID=Potri.009G095900.1.v4.1 annot-version=v4.1
ATGTTGCCTACAACATCGAGAGGGCGTGCATCATCGTCCTCCACTTCTCGAGCTAACTCCTCCACTTTCCCTCAGTACCTCCGTCGAATCATCAAGTGGC
AGCAAATGGACGTTGAATACACTTTCTGGCAAATGCTTCACTTGTGCACCTCACCAAAAGTCGTCTATCAGCACACTAAGTATCACAAACAAACTAAGAA
TCAATGGGCACGTGACGACCCTGCTTTTGTTGTAATCTGCAGCCTCCTTTTGGTAGTTGCAGCTTTGGCTTATTGTGCCGCGTATGACCACAGTGCCGGA
CATGCTGTTTTTGTAGTTATTTCCGTGTTATTTTTTCATTTTTTAATTTCAGGAGCTGGTCTGGCTACATGTTGTTGGTTCCTAACTAATGCATACCTTC
GGGAGGAGGCTCCAAATAGTCATGTTGTTGAGCAACGGGTTGAATGGCTGTATGCATTTGATGTGCACTGCAATTCTTTCTTCCCAATGTTTGTCATGCT
TTATGTTATACATTATTTTCTGTCACCTCTTTTGGTTGCCCATGGGTTCATACCTGTATTGCTGTCAAACCTGCTGTTCATGGTGGCAGCCTCGTACTAT
CATTACCTCAACTTTTTAGGCTATGATGTGTTACCCTTTCTGGAGAGAACAACATTTTTCCTCTATCCAATTGGTGTTGTCATTGTCCTGTCTCCTATTT
TGATTTTAAGTGGCTTCAATCCTTCGAGATATTTTATGAATGTGTACTTTAGTCAAAGGGTGTGA
AA sequence
>Potri.009G095900.1 pacid=42771695 polypeptide=Potri.009G095900.1.p locus=Potri.009G095900 ID=Potri.009G095900.1.v4.1 annot-version=v4.1
MLPTTSRGRASSSSTSRANSSTFPQYLRRIIKWQQMDVEYTFWQMLHLCTSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLVVAALAYCAAYDHSAG
HAVFVVISVLFFHFLISGAGLATCCWFLTNAYLREEAPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPLLVAHGFIPVLLSNLLFMVAASYY
HYLNFLGYDVLPFLERTTFFLYPIGVVIVLSPILILSGFNPSRYFMNVYFSQRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G15240 UNC-50 family protein (.1) Potri.009G095900
[exp]
0 1
AT3G25040 ERD2B endoplasmic reticulum retentio... Potri.001G315800
[exp]
1.00 0.9582
AT1G02130 ARA5, AtRABD2a,... ARABIDOPSIS THALIANA RAB D2A, ... Potri.001G080400
[exp]
2.00 0.9466
AT4G32120 Galactosyltransferase family p... Potri.006G257200
[exp]
4.24 0.9332
AT5G25530 DNAJ heat shock family protein... Potri.018G034600
[exp]
5.29 0.9122
AT1G42480 unknown protein Potri.005G253600
[exp]
6.70 0.9200
AT2G40060 CLC2 clathrin light chain 2, Clathr... Potri.010G190400
[exp]
6.92 0.9048
AT4G11150 TUFF, EMB2448, ... embryo defective 2448, vacuola... Potri.019G029200
[exp]
8.00 0.9391 VATE.1
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Potri.001G147000
[exp]
8.30 0.9136
AT2G21870 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, ... Potri.005G085500
[exp]
9.38 0.9294
AT5G18280 ATAPY2 apyrase 2 (.1.2) Potri.013G053500
[exp]
10.67 0.9392

Potri.009G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.