Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15290 322 / 2e-110 ATTIC21, TIC21, CIA5, PIC1 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300500 [exp] 483 / 3e-174 AT2G15290 331 / 3e-114 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014100 [exp] 334 / 2e-115 AT2G15290 328 / 3e-113 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1) Lus10019814 [exp] 327 / 7e-113 AT2G15290 325 / 6e-112 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12263 [poplar] [flax] DUF3611 Protein of unknown function (DUF3611)
Representative CDS sequence Show only first row Show all	>Potri.009G096300.1 pacid=42772367 polypeptide=Potri.009G096300.1.p locus=Potri.009G096300 ID=Potri.009G096300.1.v4.1 annot-version=v4.1 ATGCAAACGCTACTCCTGCCGGCGGTTCGCTCTGGCACGGCGTATTCCGCGGCGGTGGGACCAACGCCTCCTCTCGTACACCGCCTAAGTCACCGAGCAC TCCCCTCTCCTCCGAATACTCTCTCAACCTCTCATAAATCCACACAACCTCTACCATTATTCTCTTACAGTAGCTCATTATCTAGTTACGATCCTCTCAA GAACGAAACATCAAAACTTTTATCTACCCAAACAAACGCTTCCAATGCAACTGCTCCTGCTTTCAATTCCCAAAACGACGAGGCAGAAAGGGCAAAACTC GCTCAGGTGGCAAAGAGATTAGAGAATACATCAAGGTATTTTAAGCGGCTGGGTAATCTAGGATTCTGGGGGCAGCTAATATGTGCTACAGTGGCAGCTG TGATTCTTTCGTTTTCTGTTGTTGTCACTGGGAAGATCCCATCGCCTCCTACTTTTTATGCCACTCTTGGTGGGATTGCAGCTGCATTCATTTCTGTGTT CTGGTCATTTGGGTACATTCGGCTTTCTGAGAAGCTGCGAAAAACTGCTAATGATCCTTCCAAGGCACCTCCTCGTGCTGATGTTGTGAAAAGCTTGAAA AATGGTATAGTACTGAACCTGTTGGGAATGGGAGCAGCCATTCTTGGCATGCAAGCCACAGTGGGATTGTTGGTTGCAAAGGCTCTAACTTCCTCTGCAA ATCCTTATTACCAGCAAATGACTCCTGGTTACAGTCCAGTTCTTGCGCTGGATGTGTTTTTGGTGCAGGCGTCAGCAAACACCATCCTTTCGCACTTCCT GGGGCTCGTATTCTCCTTGGAACTCTTGCGCTCAGTGACACTACCACCGTCAGAAAGTCTTCCAGTCTTTAAGGTGGCATAA
AA sequence Show only first row Show all	>Potri.009G096300.1 pacid=42772367 polypeptide=Potri.009G096300.1.p locus=Potri.009G096300 ID=Potri.009G096300.1.v4.1 annot-version=v4.1 MQTLLLPAVRSGTAYSAAVGPTPPLVHRLSHRALPSPPNTLSTSHKSTQPLPLFSYSSSLSSYDPLKNETSKLLSTQTNASNATAPAFNSQNDEAERAKL AQVAKRLENTSRYFKRLGNLGFWGQLICATVAAVILSFSVVVTGKIPSPPTFYATLGGIAAAFISVFWSFGYIRLSEKLRKTANDPSKAPPRADVVKSLK NGIVLNLLGMGAAILGMQATVGLLVAKALTSSANPYYQQMTPGYSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSESLPVFKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Potri.009G096300 [exp]	0	1
AT3G56160			Sodium Bile acid symporter fam...		Potri.008G021600 [exp]	6.48	0.8328
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.004G199600 [exp]	9.53	0.8448	Pt-NIT2.2
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.003G045800 [exp]	11.40	0.8466
AT5G48220			Aldolase-type TIM barrel famil...		Potri.014G169100 [exp]	13.07	0.8263
AT4G29680			Alkaline-phosphatase-like fami...		Potri.018G066600 [exp]	13.71	0.7995
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.003G083500 [exp]	13.89	0.8610	LIL3.2,Lil3_2
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Potri.019G024000 [exp]	15.16	0.8607	PtrcPrxIIF,Pt-PRX.1
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.007G098400 [exp]	15.29	0.8236
					Potri.010G239400 [exp]	39.39	0.7988
AT5G28750			Bacterial sec-independent tran...		Potri.005G053400 [exp]	46.66	0.8394

Compare expression of checked genes

Potri.009G096300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.