Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34215 316 / 2e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) AT3G53010 260 / 4e-87 Domain of unknown function (DUF303) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300800 [exp] 382 / 2e-135 AT4G34215 311 / 2e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022700 [exp] 290 / 4e-99 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022600 [exp] 286 / 2e-97 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.009G096500 [exp] 154 / 2e-47 AT4G34215 117 / 3e-33 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014097 [exp] 342 / 2e-119 AT4G34215 326 / 4e-113 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001129 [exp] 267 / 2e-89 AT3G53010 296 / 6e-100 Domain of unknown function (DUF303) (.1) Lus10001128 [exp] 255 / 2e-85 AT4G34215 260 / 4e-87 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10019817 [exp] 236 / 6e-79 AT4G34215 207 / 7e-68 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042636 [exp] 199 / 2e-63 AT3G53010 220 / 3e-71 Domain of unknown function (DUF303) (.1) Lus10042634 [exp] 135 / 9e-40 AT4G34215 122 / 7e-35 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042635 [exp] 75 / 1e-15 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF03629 [poplar] [flax] SASA Carbohydrate esterase, sialic acid-specific acetylesterase
Representative CDS sequence Show only first row Show all	>Potri.009G096400.1 pacid=42771177 polypeptide=Potri.009G096400.1.p locus=Potri.009G096400 ID=Potri.009G096400.1.v4.1 annot-version=v4.1 ATGGAAGAAGTGGCCCAATCGACCAAAACGATTTTCGTATTAGCTGGACAGAGCAATATGTCCGGTCGCGGCGGTGTCATCAAAGACTCCCACAACAACC AGAAGCTTTGGGACAGGGCGGTACCTCTAGAGTGCCAACCTCACCCCAACATCCTCCGTTTATCAGCCAAACTCAAATGGGAACCGGCAAGTGAACAAAT CCACGCTGATATTGATACAAAAAAAGCTTGTGGGGTGGGGCCAGGCATGTCGTTCGCCAACGCTGTGAGGGAGCGGATCACCGGGGTTGTGGGTTTGGTG CCGTGTGCGGTGGGTGGCACGGCGATTAAAGAGTGGGCACGAGGAGAGGAATTGTATGAGAATATGGTGAAGAGAGCGAAGGAGAGTGTGAAAGATGGTG GAGAGATTAAGGGTTTATTGTGGTTCCAAGGAGAGAGTGACACATCCACCCAGATTGAAGCTGATGCGTACCAGGGGAACATGAAGAAGCTGATTGAGAA TGTTAGAGAGGATCTCGGCTTGCCTTCCCTTCCTATCATCCAGGTAGCAATCGCATCAGGATTGGATGATAACTACATGGAAAAAGTAAGAGAAGCACAG CTAAACATCAATCTGCCAAATGTGGTATGTGTGGATGCCAAGGGGTTGGATCTCAAGGAGGATCATCTTCACCTAACAACCGAATCTCAGGTCAAGCTGG GCAACATGTTGGCTGATGCCTACCTCAAACATTTTGCAGCATCTCAGTAA
AA sequence Show only first row Show all	>Potri.009G096400.1 pacid=42771177 polypeptide=Potri.009G096400.1.p locus=Potri.009G096400 ID=Potri.009G096400.1.v4.1 annot-version=v4.1 MEEVAQSTKTIFVLAGQSNMSGRGGVIKDSHNNQKLWDRAVPLECQPHPNILRLSAKLKWEPASEQIHADIDTKKACGVGPGMSFANAVRERITGVVGLV PCAVGGTAIKEWARGEELYENMVKRAKESVKDGGEIKGLLWFQGESDTSTQIEADAYQGNMKKLIENVREDLGLPSLPIIQVAIASGLDDNYMEKVREAQ LNINLPNVVCVDAKGLDLKEDHLHLTTESQVKLGNMLADAYLKHFAASQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	0	1
AT5G60450	ARF	ARF4	auxin response factor 4 (.1)		Potri.009G011800 [exp]	3.16	0.8342
AT1G07300			josephin protein-related (.1)		Potri.001G249500 [exp]	3.74	0.8666
AT1G26100			Cytochrome b561/ferric reducta...		Potri.010G131100 [exp]	4.58	0.8562
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	4.89	0.8104
AT2G44930			Plant protein of unknown funct...		Potri.017G019400 [exp]	6.00	0.8484
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	9.48	0.8170
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.013G149000 [exp]	11.31	0.8225
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	13.03	0.7765	CCRL2,CCR.9
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.004G104000 [exp]	14.96	0.7246
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Potri.001G214500 [exp]	16.09	0.7733

Compare expression of checked genes

Potri.009G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.