Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34200 888 / 0 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 857 / 0 D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 799 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G17744 181 / 3e-54 unknown protein AT1G72190 106 / 1e-24 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G68010 101 / 6e-23 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G14780 100 / 1e-22 FDH formate dehydrogenase (.1) AT1G79870 98 / 2e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 97 / 9e-22 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 83 / 5e-17 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300900 [exp] 1035 / 0 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 892 / 0 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 889 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 829 / 0 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 823 / 0 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.004G175800 [exp] 108 / 5e-25 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.003G052700 [exp] 98 / 2e-22 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G161300 [exp] 92 / 5e-20 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.013G104200 [exp] 91 / 2e-19 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014096 [exp] 945 / 0 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 943 / 0 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 940 / 0 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 437 / 4e-147 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037333 [exp] 264 / 2e-85 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037552 [exp] 106 / 4e-25 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019793 [exp] 103 / 1e-23 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10014115 [exp] 105 / 2e-23 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10025796 [exp] 97 / 7e-22 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 97 / 9e-22 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF00389 [poplar] [flax] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0063 [poplar] [flax] NADP_Rossmann PF07991 [poplar] [flax] IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G096600.1 pacid=42772868 polypeptide=Potri.009G096600.1.p locus=Potri.009G096600 ID=Potri.009G096600.1.v4.1 annot-version=v4.1 ATGGCAGCCACCACCCCTACCGCCGCTTCCAACCTCCTCATTACCAAGAAAAATCTCTCCTCCCTCTCTCTCATTTCCACCAACAAACTCCCCACCTTCT CCCCCCTTCATACATCCTCACGCAGACAACGTTTCATAGTCCTCTTCGCAAGCCTAAACTCAAAACCAACAGTCTTGGTAGCAGAAAAACTAGGAGAAGC GGGCATAAACCTTTTGAAAGATTTTGCAAACGTTGACTGTTCTTACAATCTAAGCCCAGATGAACTTTGTACCAAGATCTCACTTTGTGATGCCCTTATT GTACGTAGTGGAACTAAAGTCAGTCGTGAAGTTTTTGAATCTTCTGGCGGTAGATTAAAGGTTGTTGGTAGAGCTGGTGTTGGTATTGATAATGTTGATC TTGCTGCCGCAACTGAACATGGATGTTTGGTTGTCAATGCTCCTACTGCCAATACTATTGCTGCTGCTGAACATGGAATTGCTTTGTTGGCTGCTATGGC GAGAAATGTTGCTCAGGCTGATGCCTCTGTTAAAGCTGGAAAGTGGCAGAGGAACAAATATGTGGGCGTGTCACTTGTTGGGAAAACGCTTGCTGTCATG GGATTTGGTAAGGTTGGATCAGAAGTTGCTAGGCGTGCCAAGGGGCTTGGCATGCATGTAATTGCTCACGATCCATATGCCCCAGCAGACCGCGCTCGTG CAATTGGCGTGGAGCTTGTGAGCTTTGATGAAGCCTTAGCAACTGCAGATTTCATCTCCTTGCACATGCCACTTACTCCTGCTACAGCAAAGATCCTCAA TGATGAGACTTTTGTGAAGATGAAGAAAGGAGTTAGAATTGTCAATGTTGCTCGTGGAGGAGTGATTGATGAAGATGCCCTGGTAAGGGCTTTGGATGCT GGGATCGTTGCTCAGGCAGCGCTTGATGTTTTCACTGTGGAGCCCCCACCACAAGACAGCAAGTTGGTGCAGCATGAGAGGGTCACTGTGACCCCACATC TTGGTGCTAGTACTATGGAAGCTCAGGAAGGGGTTGCTATTGAAATAGCAGAAGCTGTTGTCGGAGCCTTGAAAGGGGAGCTTGCTTCCACTGCAGTCAA TGCACCAATGGTGCCTGCTGAGGTTCTGACTGAGCTGAAACCATTTGTTGAGCTTGCTGAGAAACTTGGGAGACTGGCTGTCCAGCTAGTGTCAGGTGGG AGTGGTGTGAAAGATGTGAAAGTGACTTATGCTTCTGCTAGGGCTCCCGATGACCTTGACACCAGGGTGCTCCGTGCCATGATTACCAAGGGTCTGATTG AGCCCATATCCAGTGTTTTTGTGAACTTGGTTAATGCTGATTTCAGTGCTAAACAGAGGGGACTAAGAATAAGTGAAGAACGCATTCTTCTAGATGGTTC TCCTGAGAGTCCACTTGACTTTATCCAGGTTCAAATCGCCAATGTGGAATCAAAATTCGCCAGTGCCATATCAGAGACAGGGGAGATTAAGGTTGAGGGA CGAGTGAAGGATGGAATTCCCCATTTGACCAGGGTTGGATCTTTTGAGGTGGATGTGAGCTTGGAAGGTAGCATTATACTCTGCCGACAAGTTGATCAGC CTGGTATGATTGGCAAGGTGGGAAGCGTATTAGGAGGGCAGAATGTCAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGGAAGCAAGCTGTCAT GGCAATTGGAGTTGATGAGCAACCCAGCAAAGAAACTTTGAAAAAGATAGGTGATATTCCGGCCGTTGAAGAGTTTGTTTTCCTCAAGTTATAG
AA sequence Show only first row Show all	>Potri.009G096600.1 pacid=42772868 polypeptide=Potri.009G096600.1.p locus=Potri.009G096600 ID=Potri.009G096600.1.v4.1 annot-version=v4.1 MAATTPTAASNLLITKKNLSSLSLISTNKLPTFSPLHTSSRRQRFIVLFASLNSKPTVLVAEKLGEAGINLLKDFANVDCSYNLSPDELCTKISLCDALI VRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTIAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVM GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEALATADFISLHMPLTPATAKILNDETFVKMKKGVRIVNVARGGVIDEDALVRALDA GIVAQAALDVFTVEPPPQDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELASTAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVSGG SGVKDVKVTYASARAPDDLDTRVLRAMITKGLIEPISSVFVNLVNADFSAKQRGLRISEERILLDGSPESPLDFIQVQIANVESKFASAISETGEIKVEG RVKDGIPHLTRVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGGQNVNVSFMSVGRIAPRKQAVMAIGVDEQPSKETLKKIGDIPAVEEFVFLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34200		EDA9	embryo sac development arrest ...		Potri.009G096600 [exp]	0	1
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.018G045100 [exp]	7.74	0.6533	HB1.5
AT4G35630		PSAT	phosphoserine aminotransferase...		Potri.005G099900 [exp]	10.19	0.6914
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	10.81	0.6917
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.007G020100 [exp]	14.14	0.6641
AT5G13500			unknown protein		Potri.001G275600 [exp]	14.69	0.6250
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	21.07	0.6411
AT1G80610			unknown protein		Potri.001G313900 [exp]	21.79	0.6060
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	26.66	0.6667
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	42.35	0.6058
AT5G08570			Pyruvate kinase family protein...		Potri.008G002500 [exp]	43.08	0.5811

Compare expression of checked genes

Potri.009G096600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.