Plant FIBer expression Database

Potri.009G096700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19490 687 / 0 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
AT1G49810 508 / 3e-177 ATNHD2 SODIUM:HYDROGEN ANTIPORTER 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G301000
[exp]
833 / 0 AT3G19490 694 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019820
[exp]
736 / 0 AT3G19490 860 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Lus10014094
[exp]
734 / 0 AT3G19490 858 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF03600 CitMHS Citrate transporter
Representative CDS sequence
>Potri.009G096700.1 pacid=42772389 polypeptide=Potri.009G096700.1.p locus=Potri.009G096700 ID=Potri.009G096700.1.v4.1 annot-version=v4.1
ATGGCATCCTTCTCAAATGGGACACACCACTTACACATAACAAACCGATTCAAGAAACAATCATTCCATTCTCTATCTTCCACCCATCTATCGTCACTAC
CTTATAAGTCTTGTCTTGGTTCATCTTTGTGTAAATTAAGAGGTTCAAGAACTCTTGGTAATGAACTACTTGCTAGAGCTGAAGACAAGGCTAAAGGGTC
GTCATCATCACCTCCACCTTCTTATCCTTCAAATGAGCAACAAGGTCAACAGCTCAACATCGATAAACAGCTTCAGGAGCTGGAACAAATATCTGGATCA
TGTGACCCTTTGTGCTCACTTGATGAAACAAGCTCCCGAGATTTTGAAGCCAACTACCAGCCAAAAACTGATTTGGTGAAAGCTCTTGCAATTTTTGCTG
CAGCTGGAACAGGGGCGGTGGCAATCAACCATTCATGGGTGGCTGCCAATCAGGATCTTGCTATGGCATTGCTTTTTGGAATAGGATATGCAGGCATTAT
CTTTGAAGAGTCTCTAGCCTTCAATAAAAGTGGAGTGGGATTATTGATGGCTGTGAGTTTATGGGTAATAAGAAGCATTGGGGCTCCTTCACCTGATATA
GCTGTTTCAGAGCTGACACATGCTTCTGCAGAAGTCAGTGAAATAGTATTTTTCCTGCTTGGTGCAATGACCATTGTAGAGATAGTTGATGCACATCAAG
GATTTAAGCTGGTTACAGACAATATAACCACTCGAAAGCCAAGGACTCTTCTTTGGGTGGTTGGTTTTGTGACATTTTTCCTTAGTTCAGTCCTCGACAA
CCTGACATCTACTATTGTCATGGTTTCTTTATTGAGGAAACTAGTACCTCCATCAGAATACCGCAAGCTTCTTGGAGCTGTTGTTGTGATTGCAGCAAAT
GCTGGTGGTGCATGGACTCCAATTGGTGATGTTACAACCACCATGCTATGGATACATGGGCAGATATCCACATTGCCAACCATGAAGGGCTTGCTTGTAC
CGTCTGCTGTTTCTCTAGCTGTCCCACTGTCTCTATTGTCCCTGACCAGTGAAGTAAACGGAAAGGGACAGGACTTGCCGAATGTTTTGGCATCTGAGCA
GATGGCTCCTCGAGGACAGCTTGTTTTCTCTGTGGGTATTGGAGCTTTAATTTTTGTTCCTGTGTTCAAGGCCCTGACCGGATTGCCTCCTTTCATGGGA
ATGCTGCTTGGGCTTGGAGTTCTTTGGATTCTCACAGATGCTATTCATTATGGCGAATCAGAAAGGCAAAGGTTAAAAGTACCACAGGCTTTATCGCGGA
TTGACACTCAAGGAGCCCTTTTCTTCCTTGGAATCCTTTTATCTGTGAGCAGTCTGGAGGCAGCAGGGCTTCTTCGTGAACTAGCAAATTACCTTGATGC
ACATATTCCAAATTTTGAACTGATTGCAAGTGCAATAGGAGTTGGATCAGCAATTATAGACAATGTTCCACTGGTTGCAGCAACAATGGGAATGTACGAT
CTCTCCTCTTTCCCGCAAGATCATGAATTTTGGCAGTTAATTGCATTTTGTGCTGGAACTGGTGGTTCCATGCTAGTTATTGGCTCCGCCGCTGGAGTTG
CTTTTATGGGGATGGAAAAGGTGGACTTCTTTTGGTACCTGCGGAAGGTGAGTGGTTTTGCTTTTGCTGGTTATGCTGCTGGTATTGCTGCCTATTTAGC
TGTTCATAACTTCAGCATCTCCCTACCAACAACTCTAGCAGAGGTTCCTTTCCTCTCAGGTTCATAA
AA sequence
>Potri.009G096700.1 pacid=42772389 polypeptide=Potri.009G096700.1.p locus=Potri.009G096700 ID=Potri.009G096700.1.v4.1 annot-version=v4.1
MASFSNGTHHLHITNRFKKQSFHSLSSTHLSSLPYKSCLGSSLCKLRGSRTLGNELLARAEDKAKGSSSSPPPSYPSNEQQGQQLNIDKQLQELEQISGS
CDPLCSLDETSSRDFEANYQPKTDLVKALAIFAAAGTGAVAINHSWVAANQDLAMALLFGIGYAGIIFEESLAFNKSGVGLLMAVSLWVIRSIGAPSPDI
AVSELTHASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVVGFVTFFLSSVLDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAAN
AGGAWTPIGDVTTTMLWIHGQISTLPTMKGLLVPSAVSLAVPLSLLSLTSEVNGKGQDLPNVLASEQMAPRGQLVFSVGIGALIFVPVFKALTGLPPFMG
MLLGLGVLWILTDAIHYGESERQRLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLRELANYLDAHIPNFELIASAIGVGSAIIDNVPLVAATMGMYD
LSSFPQDHEFWQLIAFCAGTGGSMLVIGSAAGVAFMGMEKVDFFWYLRKVSGFAFAGYAAGIAAYLAVHNFSISLPTTLAEVPFLSGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Potri.009G096700
[exp]
0 1
AT5G27410 D-aminoacid aminotransferase-l... Potri.005G039100
[exp]
1.00 0.8882 Pt-AAT.3
AT2G45510 CYP704A2 "cytochrome P450, family 704, ... Potri.014G072300
[exp]
5.29 0.8584
AT5G27730 Protein of unknown function (D... Potri.013G016900
[exp]
9.79 0.8753
AT1G50575 Putative lysine decarboxylase ... Potri.008G180300
[exp]
16.06 0.8686
AT2G36690 2-oxoglutarate (2OG) and Fe(II... Potri.017G048700
[exp]
16.88 0.8234
AT2G24220 ATPUP5 purine permease 5 (.1.2) Potri.006G184900
[exp]
21.81 0.8092
AT5G13750 ZIFL1 zinc induced facilitator-like ... Potri.006G026200
[exp]
22.71 0.7645
AT1G08920 ESL1 ERD (early response to dehydra... Potri.005G037000
[exp]
24.33 0.7909
AT5G11380 DXPS3 1-deoxy-D-xylulose 5-phosphate... Potri.018G031800
[exp]
24.53 0.7856
AT2G02070 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1... Potri.008G142400
[exp]
24.67 0.8391

Potri.009G096700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.