Plant FIBer expression Database

SEP1.2 (Potri.009G096800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SEP1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34190 130 / 1e-39 SEP1 stress enhanced protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G301100
[exp]
221 / 3e-75 AT4G34190 140 / 1e-43 stress enhanced protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027871
[exp]
141 / 1e-43 AT4G34190 128 / 1e-38 stress enhanced protein 1 (.1)
Lus10014093
[exp]
129 / 8e-39 AT4G34190 116 / 7e-34 stress enhanced protein 1 (.1)
Lus10019821
[exp]
127 / 3e-38 AT4G34190 119 / 6e-35 stress enhanced protein 1 (.1)
Lus10002821
[exp]
115 / 5e-33 AT4G34190 119 / 2e-34 stress enhanced protein 1 (.1)
Lus10002818
[exp]
77 / 2e-19 AT4G34190 87 / 1e-23 stress enhanced protein 1 (.1)
PFAM info
Representative CDS sequence
>Potri.009G096800.1 pacid=42772674 polypeptide=Potri.009G096800.1.p locus=Potri.009G096800 ID=Potri.009G096800.1.v4.1 annot-version=v4.1
ATGGCAGCACTAGCTCAAGTCTCTGCTTCTCTCTCCCTCTCCATTCACGATGTTAGTGCTGTTAGGCCATCAAGAACCCGCCTTCCCATTTCTCGATTAC
CCACTTCTAGTCTTGCACGAAATGGGACTGCTTTCGCTACTGGGTCTCCACTCTTGATATCAAGAACTTCTCGTCAGAAAAAGGCTGCAGGGAGAGCAAC
ATTTGTTTCTGTAAGATGTGAGAAAAGTACCCAGGAGGGCAGCGGTGTGGATGTATGGATTGGACGGCTTGCAATGATTGGCTTTGCTGGGGTCGTTAGT
GTTGAAATAGCTACAGGAAAGGGACTTTTGGAGAATTTTGGACTCACAGCCCCCTTGCCTACGGTGGCCTTGGCAGTAACAGGATTGATGGGTGTTTTGA
CAGCTGTGTTTATCTTCCAATCGGCCTCTGAGAATTGA
AA sequence
>Potri.009G096800.1 pacid=42772674 polypeptide=Potri.009G096800.1.p locus=Potri.009G096800 ID=Potri.009G096800.1.v4.1 annot-version=v4.1
MAALAQVSASLSLSIHDVSAVRPSRTRLPISRLPTSSLARNGTAFATGSPLLISRTSRQKKAAGRATFVSVRCEKSTQEGSGVDVWIGRLAMIGFAGVVS
VEIATGKGLLENFGLTAPLPTVALAVTGLMGVLTAVFIFQSASEN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34190 SEP1 stress enhanced protein 1 (.1) Potri.009G096800
[exp]
0 1 SEP1.2
AT3G23510 Cyclopropane-fatty-acyl-phosph... Potri.008G170300
[exp]
1.00 0.9881
AT5G04530 KCS19 3-ketoacyl-CoA synthase 19 (.1... Potri.013G119600
[exp]
3.46 0.9702
AT2G23910 NAD(P)-binding Rossmann-fold s... Potri.003G093700
[exp]
7.93 0.9682
AT4G30610 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRE... Potri.018G105700
[exp]
9.16 0.9737 BRS1.1
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.012G036000
[exp]
14.49 0.9572
AT1G08810 MYB ATMYB60 myb domain protein 60 (.1.2) Potri.013G067500
[exp]
14.86 0.9641
AT3G49190 O-acyltransferase (WSD1-like) ... Potri.017G010700
[exp]
14.89 0.9747
Potri.003G082300
[exp]
20.39 0.9643
AT2G21280 GC1, ATSULA GIANT CHLOROPLAST 1, NAD(P)-bi... Potri.009G124800
[exp]
21.21 0.9590 GC1.1
AT3G48675 Protein of unknown function (D... Potri.006G062100
[exp]
21.90 0.9705

Potri.009G096800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.