Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 189 / 5e-56 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 162 / 1e-45 Leucine-rich repeat (LRR) family protein (.1) AT1G73066 119 / 4e-29 Leucine-rich repeat family protein (.1) AT3G12610 111 / 2e-27 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G56370 110 / 3e-26 Leucine-rich repeat protein kinase family protein (.1) AT1G17750 108 / 3e-25 AtPEPR2 PEP1 receptor 2 (.1) AT4G03010 104 / 9e-25 RNI-like superfamily protein (.1) AT4G20940 103 / 1e-23 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 103 / 1e-23 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301400 [exp] 603 / 0 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 195 / 3e-58 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 186 / 1e-54 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 184 / 8e-54 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 179 / 3e-52 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 176 / 8e-51 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.004G065400 [exp] 114 / 2e-27 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G269800 [exp] 106 / 2e-25 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.009G064300 [exp] 104 / 5e-25 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002822 [exp] 330 / 2e-111 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 183 / 1e-53 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 183 / 1e-53 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 174 / 4e-50 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10028359 [exp] 155 / 2e-43 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 101 / 8e-24 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10019248 [exp] 103 / 1e-23 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 101 / 6e-23 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025223 [exp] 100 / 1e-22 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 99 / 3e-22 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.009G097100.1 pacid=42772614 polypeptide=Potri.009G097100.1.p locus=Potri.009G097100 ID=Potri.009G097100.1.v4.1 annot-version=v4.1 ATGCTGCCTAGCATCCTTCAGCTCCTGCTTACCTTCTCTATTCTTTTCAGCACCAAAAATCTCATAGCTTCGTCTCTCACCTTACCACAAGACATCTCAG CTCTCAAAGCCTTCAGAGCCTCAGTCAAGCCAAGTTCAATCCAACCTTGGTCTTGCCTGGCTTCATGGGACTTCATCGCCGACCCCTGTGCTGTCCCTCG CCGAACCCGCTTCACCTGTGGCATCACCTGTTCCCCTGACTCAACTCGAGTCACACAACTCACTCTTGATTCAGCTGGCTACTCAGGGCGACTCACCCCA CTCACTTCCCAACTCACCAGCCTCATTATCCTCGACCTCGCAGATAACAACTTCTTCGGTCCTATCCCCTCCTCCATCTCCTCTCTGATCAACCTCCAAA CCCTGACTCTCCGTTCCAACTCGTTCTCCGGCTCGGTCCCTGACTCAATCACCAACCTTAAATCCCTCGAATCTTTAGACCTTTCACATAATTCTTTATC TGGTTATCTCCCAAAAACCATGAATTCAATGTCAAGCTTAAGGAGACTCGACCTTAGTTACAACAAACTAACTGGGTCTTTACCAAAACTACCATATAAC TTGCTAGAACTGGCTTTGAAGGCCAATTCTTTGTCTGGATCATTATCAAAATCATCCTTTGACAGCTTAACTCAGTTAGAAGTAGTCGAACTCAGTGAAA ACTCGCTCACTGGCACTCTAGAATCTTGGTTCTTTCTCTTACCTGCGCTTCAACAAGTTGATTTAGCCAATAACAGCTTGACACGTCTCGAGATCCCAAA GCCTGCTAACAGTGACCTCGTGGCTGTTGATCTTGGGTTCAATAAAATCGAGGGAAACGCCCCCTTGCATTTTGCTGATTATCCACTGCTGTCATCATTG TCACTAAGATACAACAGCTTACGTGGCACGATCCCATTGGAGTATAGTCGAAAGAAGAGTTTGAGAAGGCTGTTTCTCGATGGGAATTTCTTGATTGGAA AGCCACCACCGGCTTTTTTCGCCGCAGACAGGTCGGTTTCCGGTAGCATAGGGGATAATTGTCTCCAAGCATGTCCAGGTTCGTCTCAGCTGTGCATGCC TTCGCAGAAGCCAAGTTCTATATGCAAGCAAGCTTACGGTGGAAAACCAAGGTCTTAA
AA sequence Show only first row Show all	>Potri.009G097100.1 pacid=42772614 polypeptide=Potri.009G097100.1.p locus=Potri.009G097100 ID=Potri.009G097100.1.v4.1 annot-version=v4.1 MLPSILQLLLTFSILFSTKNLIASSLTLPQDISALKAFRASVKPSSIQPWSCLASWDFIADPCAVPRRTRFTCGITCSPDSTRVTQLTLDSAGYSGRLTP LTSQLTSLIILDLADNNFFGPIPSSISSLINLQTLTLRSNSFSGSVPDSITNLKSLESLDLSHNSLSGYLPKTMNSMSSLRRLDLSYNKLTGSLPKLPYN LLELALKANSLSGSLSKSSFDSLTQLEVVELSENSLTGTLESWFFLLPALQQVDLANNSLTRLEIPKPANSDLVAVDLGFNKIEGNAPLHFADYPLLSSL SLRYNSLRGTIPLEYSRKKSLRRLFLDGNFLIGKPPPAFFAADRSVSGSIGDNCLQACPGSSQLCMPSQKPSSICKQAYGGKPRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.009G097100 [exp]	0	1
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	3.16	0.7735
AT3G26700			Protein kinase superfamily pro...		Potri.002G237600 [exp]	3.87	0.6845
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009300 [exp]	4.69	0.7500
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.015G143500 [exp]	6.92	0.7059
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	11.22	0.6840
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.002G148600 [exp]	14.00	0.6311
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.013G152400 [exp]	14.69	0.6613	Pt-XTH9.2
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.009G097800 [exp]	16.12	0.6569	CYCD3.2
AT2G18420			Gibberellin-regulated family p...		Potri.012G076700 [exp]	17.60	0.6665
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	26.45	0.6789

Compare expression of checked genes

Potri.009G097100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.