Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35220 291 / 1e-100 Cyclase family protein (.1) AT1G44542 290 / 3e-100 Cyclase family protein (.1) AT4G34180 284 / 4e-98 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301600 [exp] 363 / 5e-129 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301700 [exp] 347 / 9e-123 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.001G301501 [exp] 324 / 2e-113 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.009G097300 [exp] 280 / 3e-96 AT4G35220 343 / 6e-120 Cyclase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019822 [exp] 302 / 7e-105 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10014091 [exp] 293 / 6e-102 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10027872 [exp] 276 / 2e-95 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10014092 [exp] 282 / 3e-94 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10001508 [exp] 240 / 2e-80 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10031454 [exp] 235 / 2e-78 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10031453 [exp] 230 / 2e-76 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10001509 [exp] 229 / 4e-76 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10019823 [exp] 102 / 2e-28 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF04199 [poplar] [flax] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Potri.009G097201.1 pacid=42771355 polypeptide=Potri.009G097201.1.p locus=Potri.009G097201 ID=Potri.009G097201.1.v4.1 annot-version=v4.1 ATGAAGAATGGGTCCTCCGCCAACATATCGGAGATGAAGTTGATCACTCATACTGGCACACACGTTGATGCACCTGGACATTACCATGATCATTACTTCG ATGCTGGGTTTGATGTGGACACTCTTGACCTTGAAGTGCTTAATGGTCCAGGGCTATTAATTGATGTTCCAAGGGGAACGAACATAACTGCTGAGGTTAT GAAGTCATTGCGTATTCCTAAAGGAGTTCGTCGTGTTCTTTTCAGAACAGAAAATACCGACAGGCGACTAATGTTCAAAAATCAGTTTGATACAAGCTTT GTGGGATTTACCACGGACGGAGCAAAATGGCTGGTGGAGAACACTGACATTAAGCTTATTGGGATCGATTACTTGGCTGTTGCTGCCTGGAGTGATGTGG TTCCAGGCCATCTTGTCCTTCTGGAAAGCAGGGAAATCATCATTGTGGAAGGCCTAAAACTCGATGACATCCAACCTGGAGTTTATTCTATCCACTGCTT GCCCCTAAGGATACTTGGTGCTGAAGGATCGCCAACCCGATGCATTCTCATCAAATGA
AA sequence Show only first row Show all	>Potri.009G097201.1 pacid=42771355 polypeptide=Potri.009G097201.1.p locus=Potri.009G097201 ID=Potri.009G097201.1.v4.1 annot-version=v4.1 MKNGSSANISEMKLITHTGTHVDAPGHYHDHYFDAGFDVDTLDLEVLNGPGLLIDVPRGTNITAEVMKSLRIPKGVRRVLFRTENTDRRLMFKNQFDTSF VGFTTDGAKWLVENTDIKLIGIDYLAVAAWSDVVPGHLVLLESREIIIVEGLKLDDIQPGVYSIHCLPLRILGAEGSPTRCILIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35220			Cyclase family protein (.1)		Potri.009G097201 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.001G073600 [exp]	23.32	0.7407
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.010G182200 [exp]	71.77	0.6544
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Potri.006G243400 [exp]	75.73	0.5998
AT5G66600			Protein of unknown function, D...		Potri.007G033100 [exp]	119.31	0.6351
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.004G084100 [exp]	143.90	0.6219
AT5G05365			Heavy metal transport/detoxifi...		Potri.010G182700 [exp]	221.20	0.6043
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	263.08	0.5993

Compare expression of checked genes

Potri.009G097201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.