Plant FIBer expression Database

Potri.009G097300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35220 343 / 4e-120 Cyclase family protein (.1)
AT1G44542 311 / 4e-107 Cyclase family protein (.1)
AT4G34180 308 / 2e-106 Cyclase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G301501
[exp]
337 / 1e-117 AT4G35220 397 / 4e-141 Cyclase family protein (.1)
Potri.001G301600
[exp]
324 / 2e-112 AT4G35220 363 / 1e-127 Cyclase family protein (.1)
Potri.001G301700
[exp]
323 / 6e-112 AT4G35220 348 / 1e-121 Cyclase family protein (.1)
Potri.009G097201
[exp]
279 / 4e-96 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019822
[exp]
341 / 5e-119 AT4G35220 396 / 1e-140 Cyclase family protein (.1)
Lus10014091
[exp]
322 / 6e-112 AT1G44542 333 / 3e-116 Cyclase family protein (.1)
Lus10027872
[exp]
314 / 2e-109 AT4G35220 310 / 8e-108 Cyclase family protein (.1)
Lus10014092
[exp]
319 / 2e-107 AT4G35220 366 / 3e-125 Cyclase family protein (.1)
Lus10031453
[exp]
280 / 9e-95 AT4G34180 278 / 4e-94 Cyclase family protein (.1)
Lus10001508
[exp]
278 / 3e-94 AT4G34180 281 / 2e-95 Cyclase family protein (.1)
Lus10001509
[exp]
274 / 8e-93 AT4G34180 268 / 8e-91 Cyclase family protein (.1)
Lus10031454
[exp]
272 / 6e-92 AT4G34180 274 / 1e-92 Cyclase family protein (.1)
Lus10019823
[exp]
110 / 6e-31 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0364 Leu-IlvD PF04199 Cyclase Putative cyclase
Representative CDS sequence
>Potri.009G097300.2 pacid=42771339 polypeptide=Potri.009G097300.2.p locus=Potri.009G097300 ID=Potri.009G097300.2.v4.1 annot-version=v4.1
ATGAGGGCATTGCAGCTTCTGATGCTACTAGGCTTGCTGCTATCTCCAGTCACCCTTTCACTAGCTCGTAAACCTAGAAGAGAGATCAGAGATCGTGAGG
TGTATGGTAATGGGAGAATCTTCGATATCACCCACGAGATCAATCCTAACATGCCCACATGGGAATCCAAGGACGGTCTGGGCCAGTTCATTTGGCTTGT
TGATAGCATGAAGAACGGTTCCAAACTTAATTCTTCTCAGTTTAAGCTGTCCACACACACAGGCACGCATATTGATGCACCTGGACATGTCTACGAGGAA
TACTATGAAGCTGGATATAACGTCAATTCACTTGACTTGGGTGTGCTTAATGGCCCTGCACTGCTGGTTGATGTTCCAAGGGATAGTAACATAACTGCGG
AGGTTATGAAGTCCTTGAATATTCCAAGGGGAGTGCGTCGTGTGCTATTCAGAACTTTAAATACTGACAGGAAGCTTATGTATAAAAAGGAATTTGACTC
GAGTTATGTTGCATTCATGGAGGACGGGGCAAAATGGTTGGTTGAGAACACAGACATCAAACTAGTTGGAGTTGATTACTTATCCTCTGCTGCATATGTT
AATACAATCCCACCTCATCTTATTTTTCTGAAAAAAAGACAAATCATTCTTGTGGAAGGCCTAAAACTTGACAACATTATACCAGGACATTATAATGTCC
ATTGTTTACCTCTGAGGATGCTTGACGCTGATGGATCACCAGCAAGATGCATTCTTATCAAATGA
AA sequence
>Potri.009G097300.2 pacid=42771339 polypeptide=Potri.009G097300.2.p locus=Potri.009G097300 ID=Potri.009G097300.2.v4.1 annot-version=v4.1
MRALQLLMLLGLLLSPVTLSLARKPRREIRDREVYGNGRIFDITHEINPNMPTWESKDGLGQFIWLVDSMKNGSKLNSSQFKLSTHTGTHIDAPGHVYEE
YYEAGYNVNSLDLGVLNGPALLVDVPRDSNITAEVMKSLNIPRGVRRVLFRTLNTDRKLMYKKEFDSSYVAFMEDGAKWLVENTDIKLVGVDYLSSAAYV
NTIPPHLIFLKKRQIILVEGLKLDNIIPGHYNVHCLPLRMLDADGSPARCILIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35220 Cyclase family protein (.1) Potri.009G097300
[exp]
0 1
AT5G13500 unknown protein Potri.001G275600
[exp]
2.82 0.6760
AT2G33205 Serinc-domain containing serin... Potri.003G174200
[exp]
11.22 0.7050
AT5G60760 P-loop containing nucleoside t... Potri.004G213500
[exp]
28.77 0.6270
AT4G36750 Quinone reductase family prote... Potri.007G029600
[exp]
49.44 0.6388
AT4G31550 WRKY ATWRKY11, WRKY1... WRKY DNA-binding protein 11 (.... Potri.006G072400
[exp]
64.31 0.5843
AT2G33500 CO COL14 B-box type zinc finger protein... Potri.001G061800
[exp]
74.73 0.5821 COL3.2
AT3G07970 QRT2 QUARTET 2, Pectin lyase-like s... Potri.009G060400
[exp]
93.86 0.5490
Potri.005G000066
[exp]
93.91 0.6100
AT4G27950 AP2_ERF CRF4 cytokinin response factor 4 (.... Potri.015G023200
[exp]
101.48 0.5566
AT1G16670 Protein kinase superfamily pro... Potri.010G221400
[exp]
101.89 0.5974

Potri.009G097300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.