Plant FIBer expression Database

RPB36.2 (Potri.009G097600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol RPB36.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15430 547 / 0 NRPE3A, NRPD3, NRPB3, RPB35.5A, RBP36A DNA-directed RNA polymerase family protein (.1)
AT2G15400 504 / 0 NRPE3B, RBP36B DNA-directed RNA polymerase family protein (.1.2)
AT1G60850 135 / 8e-37 AAC42, ATRPAC42 DNA-directed RNA polymerase family protein (.1.2.3)
AT1G60620 130 / 7e-35 ATRPAC43 RNA polymerase I subunit 43 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G369500
[exp]
145 / 2e-40 AT1G60620 508 / 0.0 RNA polymerase I subunit 43 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002823
[exp]
565 / 0 AT2G15430 541 / 0.0 DNA-directed RNA polymerase family protein (.1)
Lus10027873
[exp]
563 / 0 AT2G15430 539 / 0.0 DNA-directed RNA polymerase family protein (.1)
Lus10011214
[exp]
124 / 3e-32 AT1G60620 523 / 0.0 RNA polymerase I subunit 43 (.1)
Lus10018468
[exp]
123 / 6e-32 AT1G60620 513 / 0.0 RNA polymerase I subunit 43 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
CL0509 RBP11-like PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain
Representative CDS sequence
>Potri.009G097600.2 pacid=42772618 polypeptide=Potri.009G097600.2.p locus=Potri.009G097600 ID=Potri.009G097600.2.v4.1 annot-version=v4.1
ATGGAAAGCGTCTCCTACCAACGCTTCCCAAAAATCAAAATCCGAGAAATGAAAGATGACTACTTAAAATTCGAGCTCCGTGAAACCGACGCGTCAATGG
CCAACGCTCTTAGGCGCGTCATGATCGCCGAAGTTCCAACAATCGCAATCGACCTCGTTGAAATCGAAGTGAACTCATCGGTCTTAAACGACGAGTTCAT
TGCTCACCGACTCGGCCTCATTCCTCTCACCAGTGAGCGCGCTATGGGGATGCGATTCTCGCGTGACTGTGACGCTTGTGATGGTGACGGCCAGTGTGAG
TATTGCTCTGTTGAGTTTCATTTGAGAGCTAAGTGTATAACGGACCAGACGCTTGATGTTACCAGTAAGGATCTGTACAGTTCGGATCATGCCGTTATTC
CTGTTGATTTCTCTGATCCTTCTGACGCTAATGATCCTTTCGATCATACAGAGACGCAGAGGGGGATTATTATTGTGAAGTTGCGCCGTGGGCAAGAACT
GAGGCTGAGGGCCATAGCTAGGAAAGGGATTGGGAAAGATCATGCGAAATGGTCTCCTGCAGCAACTGTAACTTTCATGTATGAACCTGAGATTCATATC
AATGAAGATTTGATGGAGACTTTGACACTTGAGGAAAAATTAAGTTGGATTGAAAGCAGTCCTACCAAAGTTTTTGATATTGACAAAGTTACCCAACAGG
TTGTAGTGGTTGATCCTGAGGCCTATACTTATGATGATGAAGTGATTAAGAAAGCAGAAGCTATGGGGAAACGGGGACTCATTGATATTCGTGCCAAGGA
AGACAGTTTCATATTTACTGTGGAATCTACTGGTGCAGTCAAGGCTTCTCAGTTGGTTCTTAATGCTATTGAGATTTTAAAACAAAAGCTTGATGCTGTT
CGACTTTCTGATGACACTGTTGAAGCCGATGATCAGTTTGGTGAGCTTGGTGTTCACATGCGCGGAGGTTGA
AA sequence
>Potri.009G097600.2 pacid=42772618 polypeptide=Potri.009G097600.2.p locus=Potri.009G097600 ID=Potri.009G097600.2.v4.1 annot-version=v4.1
MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCE
YCSVEFHLRAKCITDQTLDVTSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI
NEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAV
RLSDDTVEADDQFGELGVHMRGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G15430 NRPE3A, NRPD3, ... DNA-directed RNA polymerase fa... Potri.009G097600
[exp]
0 1 RPB36.2
AT3G17910 EMB3121, SURF1 SURFEIT 1, EMBRYO DEFECTIVE 31... Potri.012G045200
[exp]
3.46 0.7829
AT2G30920 ATCOQ3, EMB3002 embryo defective 3002, coenzym... Potri.014G093100
[exp]
4.58 0.7325
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.018G061050
[exp]
4.69 0.7852
AT5G11340 Acyl-CoA N-acyltransferases (N... Potri.018G032400
[exp]
5.65 0.7848
AT2G30260 U2B'' U2 small nuclear ribonucleopro... Potri.019G121400
[exp]
8.36 0.7785
Potri.001G340100
[exp]
11.22 0.7795
AT4G39880 Ribosomal protein L23/L15e fam... Potri.007G093100
[exp]
12.16 0.7121
AT3G10950 Zinc-binding ribosomal protein... Potri.003G085100
[exp]
14.14 0.7795
AT5G55140 ribosomal protein L30 family p... Potri.014G157400
[exp]
17.32 0.7804
AT2G35795 Chaperone DnaJ-domain superfam... Potri.006G131200
[exp]
19.77 0.7415

Potri.009G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.