Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYCD3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34160 331 / 3e-112 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 267 / 3e-87 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 259 / 6e-84 CYCD3;3 CYCLIN D3;3 (.1) AT1G70210 145 / 1e-40 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT2G22490 139 / 4e-38 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 128 / 4e-35 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 110 / 8e-28 CYCD4;2 cyclin d4;2 (.1) AT4G37630 86 / 1e-18 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 83 / 1e-17 CYCD7;1 CYCLIN D7;1 (.1) AT4G03270 79 / 3e-16 CYCD6;1 Cyclin D6;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301800 [exp] 573 / 0 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.007G048300 [exp] 329 / 3e-111 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.005G141900 [exp] 328 / 7e-111 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.002G123000 [exp] 301 / 1e-100 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 293 / 3e-97 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.005G157800 [exp] 153 / 8e-44 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.002G103500 [exp] 149 / 1e-41 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.010G095200 [exp] 137 / 2e-37 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.007G005700 [exp] 134 / 2e-36 AT1G70210 178 / 1e-53 CYCLIN D1;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019825 [exp] 350 / 2e-119 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 340 / 9e-116 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 262 / 2e-85 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 260 / 9e-85 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10018739 [exp] 251 / 6e-81 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10024796 [exp] 242 / 2e-77 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10027874 [exp] 219 / 1e-67 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10002824 [exp] 147 / 2e-41 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1) Lus10010709 [exp] 143 / 2e-39 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10029194 [exp] 139 / 3e-38 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G097800.2 pacid=42770836 polypeptide=Potri.009G097800.2.p locus=Potri.009G097800 ID=Potri.009G097800.2.v4.1 annot-version=v4.1 ATGGCAATACCTAAACAACAAGAACTAGGACAAAATGAACTAAGCACACAGCAAGAACAGAACACTTCATTCTTGCTAGATGCACTCTATTGTGAAGAGG GGAAATGGGAAGATGATTCAGAAGAAGAGGTTTTGCAAGAGAGTCCTTCCGTGAACAACCCCTCTGGCGATCTGTTTTCGATTTCATTGCTTGAACAAGA TTTGTTCTGGGAAGATGAGGAGCTTCTCTCACTCTTCTCTAAAGAACAAGAACAACAAGCTTCTGTTAGTGTCAATAATGTGGCAAGCGATCCTTTTCTT TCCAGGGCTCGTCAAGAAGCTGTGGAGTGGATGCTTAAGGTCATTGCTCATCATGGATTTTCAGCTCTCACATCAATCTTGGCTATCAATTATCTAGATA GGTTTCTTGTTAGCCCCTGTTATCAAAGAGATAATAGATCATGGATGATCCAGCTTGTGGCTGTCACTTGTCTTTCTTTGGCTGCCAAAGTTGAAGAGAC TCATGTTCCTCTTCTGCTAGACCTCCAAGTGGAAGACACGAAATATTTATTCGAGGCCAAAACCATTCAAAGGATGGAGCTACTAGTGCTTTCAACACTG AAATGGAAGATGCACCCAGTGACTCCACTTTCATTTCTTGATCATATCATTAGGAGGCTTGGATTAAAGACCAATGTTCATTGGGAGTTTCTCAGGAGAT GTGAGCATCTCCTGCTCTATGTTGTCTCTGATTCAAGATCTGGCTGTTATCTTCCTTCTGTGTTGGCCACTGCTACAATGATGCATGTTATAGACCAAGT TGAGACCTTCAATCCCATTGACTACCAGACCCAGCTTCTTGATGTTCTCAAGATAACCAAGGAAAAAGTAAATGGTTGTTATGGTCTGATTCTTGAGCTG TCGAGGACTCGAGCCATTGCCAATAACAAGCCTAAAAAGAGGAAGTTCGAGCCAACGCCTCTGCAAGGGTCATCGGTCTCTTCGTCACTAGAAACTCTCT TTAAGAAGGGCAGAACCCAAGACCAATGGGTCTTTGTGGACATTATTGGCAGCCCACGTTAA
AA sequence Show only first row Show all	>Potri.009G097800.2 pacid=42770836 polypeptide=Potri.009G097800.2.p locus=Potri.009G097800 ID=Potri.009G097800.2.v4.1 annot-version=v4.1 MAIPKQQELGQNELSTQQEQNTSFLLDALYCEEGKWEDDSEEEVLQESPSVNNPSGDLFSISLLEQDLFWEDEELLSLFSKEQEQQASVSVNNVASDPFL SRARQEAVEWMLKVIAHHGFSALTSILAINYLDRFLVSPCYQRDNRSWMIQLVAVTCLSLAAKVEETHVPLLLDLQVEDTKYLFEAKTIQRMELLVLSTL KWKMHPVTPLSFLDHIIRRLGLKTNVHWEFLRRCEHLLLYVVSDSRSGCYLPSVLATATMMHVIDQVETFNPIDYQTQLLDVLKITKEKVNGCYGLILEL SRTRAIANNKPKKRKFEPTPLQGSSVSSSLETLFKKGRTQDQWVFVDIIGSPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.009G097800 [exp]	0	1	CYCD3.2
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	1.00	0.8663
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	2.00	0.7796
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	7.14	0.7550
AT2G26520			unknown protein		Potri.004G144400 [exp]	14.07	0.6819
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	14.49	0.7100
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	15.42	0.6992	RHG4.2
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.009G097100 [exp]	16.12	0.6569
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	17.97	0.6614
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163300 [exp]	18.33	0.6915
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.009G148600 [exp]	19.59	0.7196

Compare expression of checked genes

Potri.009G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.