Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19420 812 / 0 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) AT3G50110 615 / 0 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) AT5G39400 164 / 9e-45 ATPTEN1 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) AT5G07740 49 / 1e-05 actin binding (.1) AT2G25050 45 / 0.0001 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT1G31810 43 / 0.0007 AFH14 Formin Homology 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302000 [exp] 1050 / 0 AT3G19420 848 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.007G047900 [exp] 706 / 0 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.017G089700 [exp] 160 / 4e-43 AT5G39400 555 / 0.0 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) Potri.012G067900 [exp] 47 / 6e-05 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 46 / 9e-05 AT5G07740 722 / 0.0 actin binding (.1) Potri.018G108000 [exp] 46 / 0.0001 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185501 [exp] 43 / 0.0005 AT5G58160 598 / 0.0 actin binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027876 [exp] 818 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10002826 [exp] 810 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010265 [exp] 515 / 1e-179 AT3G19420 555 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010266 [exp] 148 / 4e-41 AT3G50110 149 / 5e-42 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) Lus10035830 [exp] 48 / 3e-05 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 47 / 6e-05 AT5G58160 608 / 0.0 actin binding (.1) Lus10003482 [exp] 44 / 0.0003 AT5G07740 714 / 0.0 actin binding (.1) Lus10015724 [exp] 43 / 0.001 AT5G07740 723 / 0.0 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10409 [poplar] [flax] PTEN_C2 C2 domain of PTEN tumour-suppressor protein
Representative CDS sequence Show only first row Show all	>Potri.009G098000.1 pacid=42771837 polypeptide=Potri.009G098000.1.p locus=Potri.009G098000 ID=Potri.009G098000.1.v4.1 annot-version=v4.1 ATGGATTCAGAAACTGCCGATTCATCACCGCCACCTGTTAAATCTCCTGATACACAACCACCTCCTCATGATCCTGTGCCCGGGAATTCTGCAAGTGATG CGACATCAAAACTATCTGCAGCTGGCATAACATCATGGGCCAAAAGTTTGAAAATCCCCCAGCCATTGACTTCCTCGCCAGATGACTCGCCTACTGGAAA TGCTGGAAAATCAACCTTTGCACGTTTTACTAGTGGGTTTGGACTGCGCATGTCTCCTAAATCCCCTGCAGCAGATGATAGTCCTGAAGGAACGTCATCA ACTTCACAACCTGGTATATTTGGAACAATTACTAAGGGATTAGTTGATACTTCTAAGAATGCAGTGAAGGCAGTTCAGGTCAAAGCTCGGCATGCTGTCT CTCAAAACAAGCGAAGATATCAGGAAGGAGGTTTTGATTTGGATATGACATATATCACTGAGAATATAATTGCTATGGGATTTCCTGCTGGTAACATGAG CTCTGGGTTTTTTGGTTATGTGGAGGGGTTCTATCGAAACCACATGGAAGAAGTGATCAAGTTTTTTGAGACCCATCACAAGGACAAGTATAAAGTGTAC AATCTTTGTTCTGAAAGGCTGTATGATGCATCACTGTTTGAAGGAAAGGTGGCTAGTTTTCCATTTGATGACCACAATTGCCCCCCAACACAGCTGATAA TATCATTTTGTCAAAGTGCTTATTTGTGGTTAAAGGAGGATATTGAGAATGTTGTGGTTGTGCACTGTAAGGCTGGAATGGCAAGGACAGGGCTGATGAT TTCTAGCCTTCTTCTGTACTTAAAGTTCTTCCCTACTGCGGAGGAGTCTATTGACTATTACAACCAGAAGAGATGTTTTGATGCAAAAGGGCTTGTTCTG CCCAGCCAAATTAGATATGTAAAATATTTTGAGCGTATCTTAACATACTTCAATGGAGAAAACCAGCCAGGGCGTAGGAGCATGCTCAGGGGATTTCGGC TTCACAGGTGCCCATATTGGATCAGGCCATCTATTACCATCTCTGATCATAATGGTGTTCTCTTCTCCTCAAAAAAGCATCCCAGAACCAAGGATTTGCC GCCCGAAGATTATTGGTTTAGTGCTCCCAATAAAGGAGTTATGGTCTTTACTTTGCCAGGAGAGCCTGGTCTGACGGAGGTGTCTGGAGACTTCAAAGTT CATTTTCATGACCGCCAAGGGGATTTTTACTTTTGGTTGAACACGACATTTATGGAGAATAGACAAATTTTGAACACCAGCGATATTGATGGGTTCATTA AGAGGAAACTGCCTTCCCCAGGATTTCAGGTTGAGGTTGTGCTGGTAGATAATGATGGCTCTGTTTCAAGTGGGTCAAATGCTGAAACTGATGTGAAGAA GTCGGATGAAGGTTCAAGTACTGCTCCCGCATCAGTTGAAGCAGCTACAGCTACAGCTGAACCAAACCAAAATAAAGATCCAGGAAGTAATGATAAAGAT GATGTGTTCTCAGATGGTGAGGCAGATGAATCAGTATTTTCCAAACGAAAGCAGGCTCAAGCATCCTCTGCAGGGGGACAAAGTGCTGCCACACCAGCAC CTAGTCCTGGAACTGATAGTAAATCAGATCAAGTTGCAAGTTTAACCCAGGCAACCGAACAGTTTTCTCTGGGAAACAGGGGCTCCCAGCAATCACATGC CACTAGTCAGCCGAAAAGTGAAGTTGTAGGTGGAACTGTCTCAAGCCTTGAGGCGAACAACTCCCATAGTGAATTCAAGGCAATGGCTGCAGATGCATCC GTCTTTACCTTTGGAGATGATGAAGACTACGAAAGTGACTGA
AA sequence Show only first row Show all	>Potri.009G098000.1 pacid=42771837 polypeptide=Potri.009G098000.1.p locus=Potri.009G098000 ID=Potri.009G098000.1.v4.1 annot-version=v4.1 MDSETADSSPPPVKSPDTQPPPHDPVPGNSASDATSKLSAAGITSWAKSLKIPQPLTSSPDDSPTGNAGKSTFARFTSGFGLRMSPKSPAADDSPEGTSS TSQPGIFGTITKGLVDTSKNAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGNMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVY NLCSERLYDASLFEGKVASFPFDDHNCPPTQLIISFCQSAYLWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDAKGLVL PSQIRYVKYFERILTYFNGENQPGRRSMLRGFRLHRCPYWIRPSITISDHNGVLFSSKKHPRTKDLPPEDYWFSAPNKGVMVFTLPGEPGLTEVSGDFKV HFHDRQGDFYFWLNTTFMENRQILNTSDIDGFIKRKLPSPGFQVEVVLVDNDGSVSSGSNAETDVKKSDEGSSTAPASVEAATATAEPNQNKDPGSNDKD DVFSDGEADESVFSKRKQAQASSAGGQSAATPAPSPGTDSKSDQVASLTQATEQFSLGNRGSQQSHATSQPKSEVVGGTVSSLEANNSHSEFKAMAADAS VFTFGDDEDYESD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	0	1
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G185100 [exp]	6.63	0.7922
AT3G03160			unknown protein		Potri.015G035400 [exp]	10.53	0.6866
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184100 [exp]	11.22	0.7910
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183800 [exp]	11.61	0.7836
AT2G40116			Phosphoinositide-specific phos...		Potri.008G068300 [exp]	12.48	0.6816
AT1G12200		FMO	flavin monooxygenase, Flavin-b...		Potri.001G121000 [exp]	17.02	0.7607
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	17.43	0.7775
AT5G54585			unknown protein		Potri.001G409600 [exp]	18.65	0.6435
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.012G020200 [exp]	19.23	0.7750	Pt-LAS.3
AT1G50140			P-loop containing nucleoside t...		Potri.007G069800 [exp]	20.71	0.7538

Compare expression of checked genes

Potri.009G098000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.