Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47128 608 / 0 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 598 / 0 Granulin repeat cysteine protease family protein (.1) AT3G19390 571 / 0 Granulin repeat cysteine protease family protein (.1) AT4G36880 433 / 3e-150 CP1 cysteine proteinase1 (.1) AT3G19400 428 / 1e-148 Cysteine proteinases superfamily protein (.1.2) AT1G09850 424 / 9e-146 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G35350 394 / 3e-135 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 387 / 3e-132 XCP2 xylem cysteine peptidase 2 (.1) AT5G50260 380 / 7e-130 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT4G11310 373 / 5e-127 RD21A, RD21 Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302100 [exp] 841 / 0 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 607 / 0 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 483 / 9e-170 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 471 / 4e-165 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 419 / 6e-144 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 408 / 7e-141 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.005G256000 [exp] 388 / 4e-133 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.002G005700 [exp] 388 / 9e-133 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.015G087400 [exp] 385 / 9e-132 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014087 [exp] 663 / 0 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 660 / 0 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 650 / 0 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10024801 [exp] 584 / 0 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 545 / 0 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10018735 [exp] 449 / 2e-155 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 396 / 1e-134 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10006542 [exp] 388 / 5e-133 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 385 / 1e-131 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10003275 [exp] 384 / 2e-131 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF00396 [poplar] [flax] Granulin Granulin CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.009G098100.2 pacid=42771354 polypeptide=Potri.009G098100.2.p locus=Potri.009G098100 ID=Potri.009G098100.2.v4.1 annot-version=v4.1 ATGGCTTCTCTTTATCGATCGTTTGCCTTCTTGGCTACGTTTTATTTCCTTTCTGTCTGTTTAGCCATAGACATGTCCATAATTGATTACAACTTAAAGC ATGGCCAAGTCCCAGAAAGAACAGAGGCGGAGACATTAAGACTCTACGAGATGTGGCTAGTCAAATACGGGAAAGCATATAATGCTTTGGGTGAAAAAGA AAGAAGATTTGAAATTTTCAAGGATAATCTTAAATTCGTTGACCAACACAACTCGGTTGGGAACCCAAGTTATAAACTTGGGTTAAACAAGTTTGCGGAT TTGAGTAATGAGGAGTACCGGGCGGCTTATTTGGGCACGAGGATGGATGGAAAGAGAAGGTTGTTGGGTGGACCAAAGAGTGCGAGGTATTTGTTTAAGG ACTGTGATGATTTGCCGGAGAGTGTTGATTGGAGAGAAAAAGGAGCCGTTGCCCCTGTTAAAGATCAAGGCCAGTGTGGGAGTTGCTGGGCATTCTCAAC TGTTGGTGCTGTGGAGGGGATAAACCAGATTGTGACTGGTAACCTGACATCTCTGTCAGAACAGGAGTTGGTGGATTGCGATAAAGTATATAACCAAGGA TGCAATGGAGGTCTCATGGACTATGCCTTTGAATTTATTATGAAGAATGGTGGTATTGATACCGAAGAAGATTACCCCTACAAGGCTGTTGATAGCATGT GTGATCCAAACAGGAAAAATGCTAGAGTTGTTACAATTGATGGATACGAAGACGTTCCCCAAAATGATGAGAAGTCACTGAGAAAGGCTGTGGCAAATCA ACCTGTCAGTGTTGCCATTGAAGCTGGTGGAAGGGCTTTCCAACTCTACCAGTCTGGTGTTTTTACTGGTTCATGTGGAACACAGCTAGACCATGGTGTG GTTGTTGTTGGGTATGGTACAGAAAATGGCGTAGATTACTGGGTCGTCAGGAACTCATGGGGTCCTGCATGGGGAGAGAATGGGTACATCAGGATGGAGC GTAATGTTGCCAGCACGGAAACTGGCAAGTGTGGAATAGCAATGGAAGCTTCGTATCCCACCAAGAAGGGTGCAAACCCCCCAAATCCTGGTCCTTCCCC TCCATCTCCAGTGAACCCTTCTCCTCCACCTTCCTCAGAGTGTGATGATTACTACTCATGCCCTGCTGGAAGCACATGCTGCTGCATATATCCGTATGGT GACTATTGCTTTGGATGGGGTTGCTGCCCTCTGGAGTCCGCAACCTGCTGTGATGACCATAACAGCTGCTGTCCTCACGAGTATCCTGTCTGTGACCTTG AAGCTGGAACCTGCCGAATGAGCAAGAACAATCCATTTGGTGTTAAGGCATTGACTCGAGCGCCTGCTAGAATTGCTCAGTCTCACCAGCTTGGTGGTAA GAGGCCAGCTGGTAGGAGACTTGGCATTGTTTGA
AA sequence Show only first row Show all	>Potri.009G098100.2 pacid=42771354 polypeptide=Potri.009G098100.2.p locus=Potri.009G098100 ID=Potri.009G098100.2.v4.1 annot-version=v4.1 MASLYRSFAFLATFYFLSVCLAIDMSIIDYNLKHGQVPERTEAETLRLYEMWLVKYGKAYNALGEKERRFEIFKDNLKFVDQHNSVGNPSYKLGLNKFAD LSNEEYRAAYLGTRMDGKRRLLGGPKSARYLFKDCDDLPESVDWREKGAVAPVKDQGQCGSCWAFSTVGAVEGINQIVTGNLTSLSEQELVDCDKVYNQG CNGGLMDYAFEFIMKNGGIDTEEDYPYKAVDSMCDPNRKNARVVTIDGYEDVPQNDEKSLRKAVANQPVSVAIEAGGRAFQLYQSGVFTGSCGTQLDHGV VVVGYGTENGVDYWVVRNSWGPAWGENGYIRMERNVASTETGKCGIAMEASYPTKKGANPPNPGPSPPSPVNPSPPPSSECDDYYSCPAGSTCCCIYPYG DYCFGWGCCPLESATCCDDHNSCCPHEYPVCDLEAGTCRMSKNNPFGVKALTRAPARIAQSHQLGGKRPAGRRLGIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.009G098100 [exp]	0	1
AT2G46550			unknown protein		Potri.007G097400 [exp]	1.73	0.9515
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	3.31	0.9566
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.003G067700 [exp]	3.74	0.9349	ALDH7.2
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.001G100200 [exp]	6.32	0.9494
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.015G110000 [exp]	6.48	0.9566	Pt-ERD1.3
AT2G45900			Phosphatidylinositol N-acetygl...		Potri.001G103400 [exp]	7.74	0.9493
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	9.79	0.9343	ANR/BAN2,Pt-BAN.1
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	10.95	0.9147	Pt-IFS1.51
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Potri.018G013900 [exp]	11.66	0.9122
AT5G59910		HTB4	Histone superfamily protein (....		Potri.008G030600 [exp]	16.30	0.9202

Compare expression of checked genes

Potri.009G098100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.