Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19320 421 / 3e-143 Leucine-rich repeat (LRR) family protein (.1) AT1G49750 405 / 3e-137 Leucine-rich repeat (LRR) family protein (.1) AT4G06744 326 / 2e-107 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 249 / 1e-76 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 255 / 1e-75 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 252 / 5e-75 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT2G15880 251 / 6e-75 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 244 / 1e-72 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 234 / 3e-71 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 231 / 2e-67 LRX1 leucine-rich repeat/extensin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024300 [exp] 360 / 3e-120 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.001G302500 [exp] 358 / 8e-120 AT4G06744 411 / 5e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098700 [exp] 357 / 4e-119 AT4G06744 405 / 9e-140 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 257 / 1e-78 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 256 / 3e-77 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 249 / 4e-77 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 257 / 6e-75 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 252 / 1e-74 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 246 / 2e-74 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027878 [exp] 444 / 5e-152 AT3G19320 408 / 2e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10019830 [exp] 424 / 2e-146 AT1G49750 375 / 2e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10002828 [exp] 412 / 9e-142 AT3G19320 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) Lus10010049 [exp] 317 / 1e-103 AT4G06744 442 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 249 / 9e-78 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 250 / 3e-77 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 251 / 6e-75 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10014085 [exp] 233 / 3e-74 AT1G49750 224 / 2e-71 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 228 / 3e-69 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 226 / 1e-65 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G098601.2 pacid=42772835 polypeptide=Potri.009G098601.2.p locus=Potri.009G098601 ID=Potri.009G098601.2.v4.1 annot-version=v4.1 ATGGGTACCGCTTCTTTGTGTTCGTCAATTCTACTTTTCACTCTCATTTTTCATTCATGCTTGCATTACAATGCGGTCGTTGGGACAGAGAGGGAAGCTT TAGAAATAATCATAGGTGGGGGTGGGGGTGGATATTCTCCTGCCCCTTCTCCTGAGAATGAAAATTGTCCTCCCCCGCCCCCTCCCGAACCCCTTTGTCC CCCGCCATCCTCTCCGCCTCCTCCGCCCCCGCCCCCGCCTCCTCCGCCCCCGCCCCCGCCTCCTCCGCCTCCTCCCCCGCCGCCCCCGCCTCCTCGGCCT CCGCCACCGCCCCCTCCTCCACCGCCACCGCCACCGCCCCCTCCGCCACCCCCTCGGCCTCCGTCTCCGCCACCCCCTCGTCCTCGGCCTCGGCCTCGGC CTCGGCCTCGGCCCAAACCGCCAAGATTTGTGAGCAAAAACATCGAAAGAGACTATTACACAATTCAGAGATTCAAGAAATTGATTACTACTGATCCCAT GGGCATTACAAAAAAATGGGTGGGAAATGATGTCTGTAATTATCCAGGCTTTAAATGTGCAACTGTACCTGACCAGAAGGTGACAGCCCTTGCAGCGGCA GATTTCAATGGCTACTCTTTTGGCGGCCCGGATCTTCAGCTCACAGGTTTCCTCGATCGGTTGCTGGACTTATCCATCTTTCATGCGAACTCCAACAATT TCACTGGTCCTGTGCCAAAGAGTATTGGCACTTCCAGAGTCCGTTACTTATTTGAGGTCGATTTCAGCAACAACAAGTACTCTGGTGGATTCCCCATGTC TGTTCTTCAAGCCACCAACTTAACCTTTTTAGACATCAGGTTCAACTCATTTTCAGGGTCAGTTCCAGCTGAAGTCTTCACCTTAGACCTAGATGTGCTG TTCATCAACAACAACAAATTCTCACAACAGCTTCCTGGTAATCTCGGCTCCACACCTGTCCTTTATCTCACTTTGGCCAACAACAAGTTTAGTGGTCCCA TTCCAAGAAGTATCGGCAATGCCCGAAACCTTCTTGAAGTGCTTTTCTTGAACAATGAACTCGAAGGGTGCTTGCCATACGAAATTGGCAAATTGGACAA GACTGTCGTGTTTGATGTGGGCAGCAACAAGTTGACTGGCCCAATACCCCATTCATTTGCATGCCTAAAAAAGATGGAGATCCTGAACTTGGCCGTGAAT AAATTTTACGGGCCGGTGCCGGAGATGGTGTGCGACCTGCCTAGATTAGCGAACTTGTCTCTCTCATACAACTATTTCACTCAGGTCGGACCTGAGTGCA GGAAATTGATAAAGAAAAGGATTCTTGATGTTAGAATGAATTGCATTTTGGATCTTCCTGGTCAGAGATCAGCAGCTGATTGTGCCAAGTTCTTCTCTAT CAAGAGGACTTGTCCCAATGAGAGGTCACTCAGCTATATTCCTTGTAGGAAGGGTGGTTATTCAAGTTCATTGGAGACATCTGATCAACAATCAATGGCT CCGGCTGCTGCACCTATAACATATAATGCCCTTAAACCGCATAAGCTGCGGCTTTAA
AA sequence Show only first row Show all	>Potri.009G098601.2 pacid=42772835 polypeptide=Potri.009G098601.2.p locus=Potri.009G098601 ID=Potri.009G098601.2.v4.1 annot-version=v4.1 MGTASLCSSILLFTLIFHSCLHYNAVVGTEREALEIIIGGGGGGYSPAPSPENENCPPPPPPEPLCPPPSSPPPPPPPPPPPPPPPPPPPPPPPPPPPRP PPPPPPPPPPPPPPPPPPRPPSPPPPRPRPRPRPRPRPKPPRFVSKNIERDYYTIQRFKKLITTDPMGITKKWVGNDVCNYPGFKCATVPDQKVTALAAA DFNGYSFGGPDLQLTGFLDRLLDLSIFHANSNNFTGPVPKSIGTSRVRYLFEVDFSNNKYSGGFPMSVLQATNLTFLDIRFNSFSGSVPAEVFTLDLDVL FINNNKFSQQLPGNLGSTPVLYLTLANNKFSGPIPRSIGNARNLLEVLFLNNELEGCLPYEIGKLDKTVVFDVGSNKLTGPIPHSFACLKKMEILNLAVN KFYGPVPEMVCDLPRLANLSLSYNYFTQVGPECRKLIKKRILDVRMNCILDLPGQRSAADCAKFFSIKRTCPNERSLSYIPCRKGGYSSSLETSDQQSMA PAAAPITYNALKPHKLRL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19320			Leucine-rich repeat (LRR) fami...		Potri.009G098601 [exp]	0	1
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191400 [exp]	13.30	0.9900
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G144900 [exp]	14.83	0.9893
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.019G070900 [exp]	15.16	0.9885
AT4G23400		PIP1D, PIP1;5	plasma membrane intrinsic prot...		Potri.009G128500 [exp]	16.49	0.9894
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.004G064500 [exp]	20.19	0.9891
AT4G38770		ATPRP4, PRP4	ARABIDOPSIS THALIANA PROLINE-R...		Potri.004G168600 [exp]	24.71	0.9878
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.010G125300 [exp]	24.81	0.9887	CUT1.1
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.008G120300 [exp]	25.63	0.9886
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041700 [exp]	25.92	0.9874	Pt-PRP4.3
AT2G45180			Bifunctional inhibitor/lipid-t...		Potri.018G025900 [exp]	27.34	0.9883

Compare expression of checked genes

Potri.009G098601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.