Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06744 405 / 7e-140 Leucine-rich repeat (LRR) family protein (.1) AT3G19320 337 / 7e-112 Leucine-rich repeat (LRR) family protein (.1) AT1G49750 328 / 2e-108 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 288 / 1e-92 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 280 / 6e-87 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G28380 256 / 1e-81 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 264 / 4e-81 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 257 / 4e-81 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 264 / 2e-80 LRX2 leucine-rich repeat/extensin 2 (.1) AT4G18670 261 / 4e-79 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302500 [exp] 673 / 0 AT4G06744 411 / 5e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.014G024300 [exp] 467 / 8e-164 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098601 [exp] 370 / 2e-124 AT3G19320 421 / 5e-143 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 281 / 4e-91 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 278 / 4e-88 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 270 / 1e-86 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 274 / 2e-85 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G152800 [exp] 266 / 2e-85 AT4G29240 472 / 3e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 265 / 2e-85 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010049 [exp] 404 / 4e-139 AT4G06744 442 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) Lus10027878 [exp] 337 / 9e-112 AT3G19320 408 / 2e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10002828 [exp] 318 / 2e-106 AT3G19320 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) Lus10019830 [exp] 304 / 1e-100 AT1G49750 375 / 2e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 287 / 8e-93 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 268 / 2e-86 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 265 / 2e-81 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 251 / 1e-79 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 244 / 1e-76 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 247 / 4e-76 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G098700.1 pacid=42772882 polypeptide=Potri.009G098700.1.p locus=Potri.009G098700 ID=Potri.009G098700.1.v4.1 annot-version=v4.1 ATGTATCAAATGGGAAGCATTTCTTCAAACAACAAGAGCATATTCCACATCTCAATCCTCTTCCTTCCGTGTTTCACTTGCCTGACTTATTGCCAAGACT TTCAAGGCCTGTCTCCATTGATATCACCTCCATTAATTCCAGAAATCTTAAACTTCTTAGACCAAAGGCTTGCCTTAGTATATCCAATAATCCAAGACTT CAAGAACACTATCACCTCTGATCCCCTTGACATCACTCAAACTTGGGTTGGCGCGGATATATGCAACTACAAAGGCTTCTACTGTACTAGTCCACCTGAT AATGACTCTGCCATTACCCTTGCTTCCATTGATTTCAATGGATTCCAGCTATCTGCCCCTACTCTCGATGGCTTCATTGATCAACTCCCTGACCTTGCTC TCTTCCATGCCAACTCTAACAAATTTTCTGGCACCATATCACCAAAAATCACCAAACTACCATTTCTTTATGAACTAGACATAAGCAACAATAATTTCTT TGGCAGTTTTCCCATGGAGGTTCTTGCAATCCCTGCCCTATCATTTTTAGATATCCGATTCAATTTCTTTACTGGAACAGTTCCTCCACAAGTATTCACT CAACGCCTTGACGTACTCTTCCTCAACAACAACAATTTTATGCAAGGACTCCCTGAAAACCTAGGCTCGACCCCAGTGCTTTACCTCACCTTGGCTTACA ACAAATTTATCGGTCCAATCCCACGCAGCATCATTAAAGCTTCCGCGACATTAACTGAAGTGCTGTTCTCGCACAACTTACTTACAGGTTGCCTCCCATA TGAACTAGGTTTTTTGAGAAAACTAGTCCTTTTTGATGCTAGTTACAACTTCTTAACCGGTCCTTTACCATGCTCGTTGGGATGCTTGGCTAAGCTTGAA CAGTTCAATTTGGCCAGCAACTTATTGTATGGACAGGTGCCAGAGGTGGTGTGCGCATTGGGGAAATTGGTGAATTTGTCACTTTCAAGTAATTATTTTA CAAAACTAGGGCCAAAGTGTACGAAACTAGAGAGGAGTGGCGTTCTTGATATTAGAAAAAATTGTATTCCTGATCTTCCTGGTCAGAGATCAGCGCGGGA GTGTGCGGCTTTCTCCTTGCACCGTAGGTATTGCTCAAACCCTGCTTCGTTCAACTTCATTCCTTGTAAGGTTCCATCATTGAGTCATCCTCAGATTGGA ACAAAGAGAAATTTGGTCGGTTATAGTGCTCTTTTGAGACAGGCAGTTGAATTTCCAGGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.009G098700.1 pacid=42772882 polypeptide=Potri.009G098700.1.p locus=Potri.009G098700 ID=Potri.009G098700.1.v4.1 annot-version=v4.1 MYQMGSISSNNKSIFHISILFLPCFTCLTYCQDFQGLSPLISPPLIPEILNFLDQRLALVYPIIQDFKNTITSDPLDITQTWVGADICNYKGFYCTSPPD NDSAITLASIDFNGFQLSAPTLDGFIDQLPDLALFHANSNKFSGTISPKITKLPFLYELDISNNNFFGSFPMEVLAIPALSFLDIRFNFFTGTVPPQVFT QRLDVLFLNNNNFMQGLPENLGSTPVLYLTLAYNKFIGPIPRSIIKASATLTEVLFSHNLLTGCLPYELGFLRKLVLFDASYNFLTGPLPCSLGCLAKLE QFNLASNLLYGQVPEVVCALGKLVNLSLSSNYFTKLGPKCTKLERSGVLDIRKNCIPDLPGQRSARECAAFSLHRRYCSNPASFNFIPCKVPSLSHPQIG TKRNLVGYSALLRQAVEFPGRN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.009G098700 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120500 [exp]	1.00	0.8429
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.016G064600 [exp]	2.44	0.7993
AT1G71980			Protease-associated (PA) RING/...		Potri.013G111500 [exp]	5.29	0.7870
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.001G279400 [exp]	6.70	0.7841
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	8.48	0.7628
AT3G57200			unknown protein		Potri.006G045500 [exp]	8.71	0.8082
AT1G49310			unknown protein		Potri.004G153200 [exp]	8.94	0.7678
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	10.81	0.7768
					Potri.003G105450 [exp]	13.96	0.7682
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	14.07	0.7810

Compare expression of checked genes

Potri.009G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.