Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67210 293 / 2e-98 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT3G50220 277 / 4e-92 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT2G15440 267 / 3e-88 Protein of unknown function (DUF579) (.1) AT1G09610 178 / 4e-54 Protein of unknown function (DUF579) (.1) AT1G71690 176 / 6e-53 Protein of unknown function (DUF579) (.1) AT1G67330 166 / 3e-49 Protein of unknown function (DUF579) (.1) AT1G27930 166 / 4e-49 Protein of unknown function (DUF579) (.1) AT1G33800 161 / 2e-47 Protein of unknown function (DUF579) (.1) AT4G09990 160 / 3e-47 Protein of unknown function (DUF579) (.1) AT4G24910 127 / 3e-34 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302600 [exp] 461 / 2e-164 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 292 / 3e-98 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 290 / 3e-97 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 187 / 1e-57 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 186 / 7e-57 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 183 / 4e-56 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 178 / 3e-54 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 172 / 1e-51 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 170 / 1e-50 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027879 [exp] 304 / 6e-103 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 301 / 5e-102 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10006258 [exp] 284 / 1e-94 AT5G67210 458 / 4e-163 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10041596 [exp] 261 / 1e-85 AT5G67210 465 / 8e-166 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10009378 [exp] 245 / 4e-79 AT5G67210 336 / 5e-115 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10019326 [exp] 221 / 9e-70 AT5G67210 335 / 2e-114 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 187 / 1e-57 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 187 / 2e-57 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 177 / 2e-53 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 176 / 6e-53 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [poplar] [flax] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Potri.009G098800.1 pacid=42772742 polypeptide=Potri.009G098800.1.p locus=Potri.009G098800 ID=Potri.009G098800.1.v4.1 annot-version=v4.1 ATGAAGACAAACACTAACACGAAATTCATACTCCTTCACCCATCAATCCACAAAACCCTGCCTTCTTCTCACCGTCTTCGGTTACTCTTCATAGTCACTT CCTTTACCATAGCTTTCACTCTCACTCTCTTCACCACCACCACCTTCCCTACAACCACCACAACTTCAACTCTCACCACCTCCACCACCTCTCTCCCACT CTCCATCACCGCTGCCCTCCTCCACTACGCCTCCACAGCCAACTCCACAACACCCCACATGTCATCTGCTGAACTCTCCACCATCGTCACCACCCTTCAA AACTGCTCCCCTCATTGCAATTTCCTCGTTTTTGGCCTGACCCACGAGACCCTTCTGTGGAAATCACTCAATTTCCATGGTCGTACAATCTTTCTTGATG AAAGTGAGTACTTTGTTTCGAACTTTGAAAAAGACCACCCTGATATCGAAGCTTATGATATACAATTCACCTCCAAAGTTAGTGAAATGAGTGATCTTTT ATTAGTGACAAAGGGGCAAGTTAATGGTGACTGCAGGCCTGTACAAAATCTACTCTTCTCTGATTGTAAGCTTGGCATAAATGACATGCCTAATCACATT TATGAAATCTCTTGGGATGTGATTTTAATCGATGGGCCTCGTGGGTATTTCGCGGCGGCTCCAGGGAGGATGTCACCAATATTTACTGCTGCTGTTATGG CAAGGAGTAAGAGAGGAGGCAACAAGAAGACACATGTTTTTGTGCATGAAATTGATAGAGAAGTTGAGGGGGTTTATAGTGAAGAGTTTCTGTGTGAAGA GAATCTGGTAGAGACTGTTGATTCACTGGGACATTTTGTGTTGGAGAGAAAGGAAGCTAATTGCTTTGAGTTCTGCAAAAATTCGACATCTTTGTCATCA TCATTGCCAACTTCAATAACAAAGACGGCATCTTTATCATCCGGGGATGATGATGATTGA
AA sequence Show only first row Show all	>Potri.009G098800.1 pacid=42772742 polypeptide=Potri.009G098800.1.p locus=Potri.009G098800 ID=Potri.009G098800.1.v4.1 annot-version=v4.1 MKTNTNTKFILLHPSIHKTLPSSHRLRLLFIVTSFTIAFTLTLFTTTTFPTTTTTSTLTTSTTSLPLSITAALLHYASTANSTTPHMSSAELSTIVTTLQ NCSPHCNFLVFGLTHETLLWKSLNFHGRTIFLDESEYFVSNFEKDHPDIEAYDIQFTSKVSEMSDLLLVTKGQVNGDCRPVQNLLFSDCKLGINDMPNHI YEISWDVILIDGPRGYFAAAPGRMSPIFTAAVMARSKRGGNKKTHVFVHEIDREVEGVYSEEFLCEENLVETVDSLGHFVLERKEANCFEFCKNSTSLSS SLPTSITKTASLSSGDDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.009G098800 [exp]	0	1
					Potri.002G068333 [exp]	1.41	0.8989
AT3G57450			unknown protein		Potri.009G058500 [exp]	2.44	0.8880
					Potri.005G161100 [exp]	6.48	0.8052	AGP5.1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G028600 [exp]	15.23	0.8593
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Potri.004G222100 [exp]	18.33	0.8659
					Potri.002G182100 [exp]	26.07	0.8329
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.002G174300 [exp]	26.60	0.8466
AT1G20990			Cysteine/Histidine-rich C1 dom...		Potri.005G258800 [exp]	29.22	0.8410
					Potri.009G114701 [exp]	29.39	0.8333
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.007G020000 [exp]	30.38	0.7909

Compare expression of checked genes

Potri.009G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.