Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 558 / 0 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34131 555 / 0 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G15480 549 / 0 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34135 529 / 0 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G34138 521 / 0 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36750 431 / 1e-147 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36800 428 / 2e-146 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 425 / 3e-145 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 421 / 1e-143 UDP-Glycosyltransferase superfamily protein (.1) AT3G53160 418 / 1e-142 UGT73C7 UDP-glucosyl transferase 73C7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098966 [exp] 736 / 0 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 702 / 0 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 701 / 0 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 695 / 0 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 693 / 0 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302400 [exp] 615 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 595 / 0 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 579 / 0 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G303100 [exp] 509 / 7e-179 AT2G15490 414 / 1e-141 UDP-glycosyltransferase 73B4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019833 [exp] 590 / 0 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 583 / 0 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 550 / 0 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019835 [exp] 544 / 0 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10019832 [exp] 525 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 522 / 0 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014086 [exp] 514 / 3e-180 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 475 / 5e-165 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 456 / 5e-158 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10010239 [exp] 427 / 1e-145 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G099032.1 pacid=42772421 polypeptide=Potri.009G099032.1.p locus=Potri.009G099032 ID=Potri.009G099032.1.v4.1 annot-version=v4.1 ATGGGCAGTGAGGTTAACCAGCTACATGCTCTTTTCTTTCCTTTCATGGCTCATGGTCACATGATACCACTGGTAGACATGGCCAAGCTATTTGCTTCCC GAGGCCTGAAGACTACCATAGTCACCACCCCTCTAAATGTGCCTTTCTTCTCCAAAACAGTCCAAAGAATAAAAAATTTGGGATTTGAAATTAATATACG AACCATCGAATTCTCCACTGTTGAGACTGGATTACCAGAAGGATGTGAAAATGCAGACTTGATTATTTCTCAGGCTATGGGCTGGGATATGCTCAAAAAA TTTTTCGTGGCAACCACCATTCTCCAAGAACCCCTTGAAAGGCTACTAGAGGAAATCCATCCTGACTGCCTTATTGCAGATATGTTCTTTCCTTGGACTA CTGATGCTGCAGCTAAATTTGGAATTCCAAGGTTAGTGTTTCATGGAACTAGCTTTTTTTCTTTATGCGTTGGAGAAAGTATGAGACTATACGAGCCACA CAAGAAAGTTTCATCAGATTGTGAACCCTTTTTCATGCCTAACCTTCCTGATGATATCAAGTTGACAAGAAATGAACTGCCATATCCTGAAAGACATGAT GATGGATCCGACTTCAACAAGATGTACAAGAAGGTTAAAGAGGGAGATTCGAAAAGTTACGGGGTGGTTGTCAACAGTTTCTACGAACTTGAGCCGGTTT ATGCTGATCATTACAGAAAAGCTTTTGGAAGAAAAGCATGGCATGTAGGACCAGTTTCTCTTTGCAACAGAAACATAGATGACAAAGCAGAGAGGGGAAG AGAAGCTTCTATTAATGAAAATGAGTGTTTGAAGTGGCTTGACTCCAAGAAACCCAATTCAGTTGTTTATATCTGCTTTGGAAGTATGGCAAGCTTCTCT GCCTCTCAGCTAAAGGAGATTGCAACAGGCCTTGAAGCTTCTGGCCAGCAATTTATCTGGGTTGTTGGAAGAAACAAAAACAGTGAAGAAGATAAGGAAG ATTGGTTACCTGAAGGATTTGAGGAAAGAATGGGAGACAAGGGACTAATTATAAGAGGGTGGGCACCCCAAGTGTTGATTCTTGACCACGAAGCAATAGG AGGATTTGTGACTCATTGTGGATGGAATTCAACAGTTGAAGGCATTGCCGCTGGGGTTCCAATGGCCACATGTCCACTGTCTGCAGAGCAATTCTACAAT GAAAAGCTGGTGACACAGATATTGAAGATAGGTATCAGGATTGGTGTTCAAGAACAAGCGTTATTGGGCGGGGATAGCATTAAGAGTAAAGCTTTAGAAG AGGCAGTGAGTCGACTCATGGAGGGTGAAGAAGCAGAGGAAATGAGGGGCAAAGCAAAGGCATTTGGGAAGATGGCAAGGAAGGCAGTTGAAGAAGGGGG TTCCTCCTACTCTGATTTGAATGCTCTTATCGAGGAACTGAGCTTCTGTCACCAGGGTTAG
AA sequence Show only first row Show all	>Potri.009G099032.1 pacid=42772421 polypeptide=Potri.009G099032.1.p locus=Potri.009G099032 ID=Potri.009G099032.1.v4.1 annot-version=v4.1 MGSEVNQLHALFFPFMAHGHMIPLVDMAKLFASRGLKTTIVTTPLNVPFFSKTVQRIKNLGFEINIRTIEFSTVETGLPEGCENADLIISQAMGWDMLKK FFVATTILQEPLERLLEEIHPDCLIADMFFPWTTDAAAKFGIPRLVFHGTSFFSLCVGESMRLYEPHKKVSSDCEPFFMPNLPDDIKLTRNELPYPERHD DGSDFNKMYKKVKEGDSKSYGVVVNSFYELEPVYADHYRKAFGRKAWHVGPVSLCNRNIDDKAERGREASINENECLKWLDSKKPNSVVYICFGSMASFS ASQLKEIATGLEASGQQFIWVVGRNKNSEEDKEDWLPEGFEERMGDKGLIIRGWAPQVLILDHEAIGGFVTHCGWNSTVEGIAAGVPMATCPLSAEQFYN EKLVTQILKIGIRIGVQEQALLGGDSIKSKALEEAVSRLMEGEEAEEMRGKAKAFGKMARKAVEEGGSSYSDLNALIEELSFCHQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	0	1
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	1.00	0.9847	AG1.1
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.010G046400 [exp]	2.00	0.9752
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G034400 [exp]	2.64	0.9618
AT3G57680			Peptidase S41 family protein (...		Potri.006G055400 [exp]	3.00	0.9679
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	4.47	0.9650
AT1G05675			UDP-Glycosyltransferase superf...		Potri.017G032300 [exp]	5.29	0.9650
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.006G087200 [exp]	5.47	0.9570	Pt-DFR1.3
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	5.74	0.9560
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	7.48	0.9587
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017232 [exp]	7.93	0.9585

Compare expression of checked genes

Potri.009G099032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.